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@lowe-lab-ucl

CellX // Lowe lab UCL

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  1. arboretum arboretum Public

    Track and lineage visualization with btrack and Napari 🌲

    Python 45 11

  2. cellx-predict cellx-predict Public

    Explainable AI model of cell behavior

    Python 20 10

  3. trajectoryflow trajectoryflow Public

    Python 6 1

  4. unet_segmentation_metrics unet_segmentation_metrics Public

    Metrics for determining segmentation accuracy

    Jupyter Notebook 37 10

  5. octopuslite-reader octopuslite-reader Public

    reader for octopuslite data

    Python 2 2

  6. segment-classify-track segment-classify-track Public

    Full processing piepline for cell tracking

    Jupyter Notebook 1 1

Repositories

Showing 10 of 19 repositories
  • arboretum Public

    Track and lineage visualization with btrack and Napari 🌲

    lowe-lab-ucl/arboretum’s past year of commit activity
    Python 45 MIT 11 15 0 Updated Oct 25, 2024
  • CELL0027 Public

    Computational Cell Biophysics

    lowe-lab-ucl/CELL0027’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 6, 2024
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    lowe-lab-ucl/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 4,990 0 0 Updated Nov 21, 2023
  • unet_segmentation_metrics Public

    Metrics for determining segmentation accuracy

    lowe-lab-ucl/unet_segmentation_metrics’s past year of commit activity
    Jupyter Notebook 37 MIT 10 1 0 Updated Nov 21, 2023
  • ctc-tools Public

    CTC tools

    lowe-lab-ucl/ctc-tools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 16, 2023
  • btrack-examples Public
    lowe-lab-ucl/btrack-examples’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Aug 8, 2023
  • cellx-predict Public

    Explainable AI model of cell behavior

    lowe-lab-ucl/cellx-predict’s past year of commit activity
    Python 20 BSD-3-Clause 10 8 3 Updated Apr 4, 2023
  • octopuslite-reader Public

    reader for octopuslite data

    lowe-lab-ucl/octopuslite-reader’s past year of commit activity
    Python 2 BSD-3-Clause 2 3 0 Updated Mar 23, 2023
  • napari-btrack Public archive

    Napari plugin for btrack

    lowe-lab-ucl/napari-btrack’s past year of commit activity
    Python 1 BSD-3-Clause 3 0 0 Updated Mar 22, 2023
  • napari-btrack-reader Public archive

    Napari plugin to load btrack files

    lowe-lab-ucl/napari-btrack-reader’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 0 Updated Mar 3, 2023
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