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taxonomy synopsis
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@lskatz
lskatz committed Jun 26, 2020
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Expand Up @@ -14,6 +14,11 @@ FDA-ARGOS.
Most genomes are from species that are either studied or are common contaminants
in the Enteric Diseases Laboratory Branch (EDLB) at CDC.

Kalamari also comes with a custom taxonomy database such as defining
_Shigella_ as a subspecies of _Escherichia coli_
or defining the four lineages of _Listeria monocytogenes_.
These changes have been backed by trusted SMEs in EDLB.

## Download instructions

For usage, run `perl bin/downloadKalamari.pl --help`
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