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33 followers · 20 following
  • Genome Institute of Singapore, A*STAR
  • Singapore
  • X @LovroVrcek

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lvrcek/README.md

Hi there, I'm Lovro πŸ‘‹

Lovro's Github Lovro's Twitter Lovro's LinkedIn Lovro's email

  • πŸ“š Interested in Deep Learning 🧠 and Computational Genomics 🧬
  • πŸ”­ Currently working on applying Graph Neural Networks to de novo Genome Assembly
  • πŸ‘¨β€πŸ’» My go-to languages and frameworks: Python, PyTorch, DGL
  • πŸ“« How to reach me: Send an email to vrcek dot lovro at gmail dot com (or by clicking any of the buttons above)
  • ⚑ Hobbies: Rock Climbing πŸ§—β€β™‚οΈ, Swimming πŸŠβ€β™‚οΈ, Reading πŸ“–

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  1. lbcb-sci/GNNome lbcb-sci/GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    Python 32 4

  2. GNNome-assembly GNNome-assembly Public

    Learning to untangle genome assembly with graph neural networks.

    Python 71 11

  3. NeuralLayout NeuralLayout Public

    A GNN model that executes simplification algorithms used in the layout phase of de novo genome assembly process.

    Python 11 3

  4. reactome/reactome_gnn reactome/reactome_gnn Public

    Python 3 2

  5. advent-of-code-2020 advent-of-code-2020 Public

    My Advent of Code 2020 solutions in Python

    Python 2

  6. bioinf bioinf Public

    Forked from domjanbaric/bioinf

    Bioinformatics project - Cuckoo filter

    C++