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BGB_read_track
Martin Asser Hansen edited this page Oct 2, 2015
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BGB_read_track reads all records from a specified Biopieces Genome Browser (BGB) track into the stream as KISS type records.
Read more about the KISS format here:
http://code.google.com/p/biopieces/wiki/KissFormat
BGB_read_track <-u user> <-c clade> <-g genome> <-a assembly> <-t track> [options]
[-? | --help] # Print full usage description.
[-u <string> | --user=<string>] # User - Default=<from ~/.biopiecesrc>
[-c <string> | --clade=<string>] # Clade.
[-g <string> | --genome=<string>] # Genome.
[-a <string> | --assembly=<string>] # Assembly version.
[-t <string> | --track=<string>] # Track to read.
[-I <file!> | --stream_in=<file!>] # Read input from stream file - Default=STDIN
[-O <file> | --stream_out=<file>] # Write output to stream file - Default=STDOUT
[-v | --verbose] # Verbose output.
BGB_read_track -u maasha -c Bacteria -g S.aureus_COL -a 2006-02-21 -t 05_GenBank_Annotation
Martin Asser Hansen - Copyright (C) - All rights reserved.
December 2009
GNU General Public License version 2
http://www.gnu.org/copyleft/gpl.html
BGB_read_track is part of the Biopieces framework.