- About PBSIM
Check the original repository https://github.com/yukiteruono/pbsim2
- Simulate circular genome
Here we extended the package to enable reads simulation using a circular reference.
pbsim --depth 20
--prefix depth20
--sample-fastq sample/sample.fastq
--sample-profile-id pf1
--circular 1
sample/sample.fasta