Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

magosil86 / witsGWAS Public

Notifications You must be signed in to change notification settings
Fork 9
Star 12

Code
Issues
Pull requests
Actions
Projects
Wiki
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Wiki
Security
Insights

Running pipelines

Jump to bottom

magosil86 edited this page Aug 25, 2015 · 1 revision

Eita

Home | About | Setup guide | Running pipelines | Extending pipelines | FAQ | © 2015 witsGWAS

Toggle table of contents Pages 27

Home
About witsGWAS
Advanced association testing
Affymetrix QC pipeline
Association testing pipeline
Create a new pipeline
Examples
Further reading
Getting Started
GWAS theory and steps
History of witsGWAS
How witsGWAS pipelines work
Installing witsGWAS
Modify an existing pipeline
PCA and Admixture analysis
PLINK QC pipeline
Population structure theory
Running pipelines
- Eita
Software Dependencies
Timing of Pipeline Runs
User Group
Using the dockerized pipeline
What problem does witsGWAS solve?
Why we use h3aGWAS
witsGWAS cheat sheet
witsGWAS design principles
witsGWAS FAQ

About witsGWAS

What problem does witsGWAS solve?
witsGWAS design principles
GWAS theory and steps

Getting started

Installing witsGWAS

Dockerized pipeline

Using the dockerized pipeline

Running pipelines

How witsGWAS pipelines work
Affymetrix QC pipeline
PLINK QC pipeline
Association testing pipeline
Timing of pipeline runs
witsGWAS cheat sheet

Extending pipelines

Modify an existing pipeline
Create a new pipeline

Advanced GWAS topics

Advanced association testing
Population structure theory
PCA and Admixture analysis

Getting help

witsGWAS FAQ
User Group
Further reading

Clone this wiki locally

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.