Add notebooks for workshop

README.md

@@ -20,8 +20,10 @@ OAUTH_CLIENT_SECRET=<ORCID Secret>
 The `breeder-notebook` Jupyter Docker stack (using `jupyter/base-notebook`) is built from the [`breeder-notebook/`](./breeder-notebook) directory, using GitHub Actions.
 
 During the image build process, it pulls the following files:
-* https://napb2023.maizegenetics.net/files/brapi_helper_installer.run
+* https://napb2023.maizegenetics.net/files/napb_2023_bgh_demo_01.ipynb
+* https://napb2023.maizegenetics.net/files/napb_2023_bgh_demo_02.ipynb
 * https://napb2023.maizegenetics.net/files/napb_demo_data.tar.gz
+* https://napb2023.maizegenetics.net/files/brapi_helper_installer.run
 * https://napb2023.maizegenetics.net/files/templates.tar.gz
 
 Ensure these files are present in `breeder-genomics-hub/caddy/files` wherever you run the Compose file. This is a temporary measure until these files (templates, data, etc) are publicly accessible.

breeder-notebook/Dockerfile

@@ -65,13 +65,17 @@ RUN cd /tmp && wget https://napb2023.maizegenetics.net/files/brapi_helper_instal
 
 # Pull Brandon's demo files
 RUN cd /home/${NB_USER} && \
+ wget https://napb2023.maizegenetics.net/files/napb_2023_bgh_demo_01.ipynb && \
+ wget https://napb2023.maizegenetics.net/files/napb_2023_bgh_demo_02.ipynb && \
  wget https://napb2023.maizegenetics.net/files/napb_demo_data.tar.gz && \
- tar -xvf napb_demo_data.tar.gz
+ tar -xvf napb_demo_data.tar.gz && \
+ rm napb_demo_data.tar.gz
 
 # ILCI Templates
 RUN cd /home/${NB_USER} && \
  wget https://napb2023.maizegenetics.net/files/templates.tar.gz && \
- tar -xvf templates.tar.gz
+ tar -xvf templates.tar.gz && \
+ rm templates.tar.gz
 
 # Jupyter Notebook config
 ADD jupyter_notebook_config.py /home/${NB_USER}/.jupyter/jupyter_notebook_config.py