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  1. pipelines pipelines Public

    Pipelines for processing malaria parasite and mosquito genome sequence data.

    WDL 14 13

  2. malariagen-data-python malariagen-data-python Public

    Analyse MalariaGEN data from Python

    Jupyter Notebook 14 24

  3. vector-data vector-data Public

    Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

    7 4

  4. GeneticReportCard GeneticReportCard Public

    Genetic Report Card code

    Java 4 1

  5. ano-spp ano-spp Public

    A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus

    Jupyter Notebook 3

  6. grcMalaria grcMalaria Public

    Tools for processing and analyzing SpotMalaria Genetic Report Cards

    R 3 2

Repositories

Showing 10 of 54 repositories
  • vobs-updates Public

    Minisite with technical updates from the Malaria Vector Genome Observatory.

    malariagen/vobs-updates’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 0 10 4 Updated Dec 13, 2024
  • malariagen-data-python Public

    Analyse MalariaGEN data from Python

    malariagen/malariagen-data-python’s past year of commit activity
    Jupyter Notebook 14 MIT 24 63 (1 issue needs help) 6 Updated Dec 13, 2024
  • mgenv Public

    Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.

    malariagen/mgenv’s past year of commit activity
    Shell 1 MIT 5 7 1 Updated Dec 13, 2024
  • vector-data Public

    Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

    malariagen/vector-data’s past year of commit activity
    7 4 14 1 Updated Dec 11, 2024
  • anospp-analysis Public

    Python package for ANOSPP data analysis

    malariagen/anospp-analysis’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Dec 5, 2024
  • grcMalaria Public

    Tools for processing and analyzing SpotMalaria Genetic Report Cards

    malariagen/grcMalaria’s past year of commit activity
    R 3 2 3 1 Updated Dec 2, 2024
  • pf-haploatlas Public
    malariagen/pf-haploatlas’s past year of commit activity
    Python 1 MIT 1 18 0 Updated Nov 11, 2024
  • pipelines Public

    Pipelines for processing malaria parasite and mosquito genome sequence data.

    malariagen/pipelines’s past year of commit activity
    WDL 14 MIT 13 0 6 Updated Nov 2, 2024
  • funestus_popgen_ms Public

    Code accompanying Af1.0 publication

    malariagen/funestus_popgen_ms’s past year of commit activity
    0 MIT 0 0 1 Updated Oct 31, 2024
  • GeneticReportCard Public

    Genetic Report Card code

    malariagen/GeneticReportCard’s past year of commit activity
    Java 4 MIT 1 0 0 Updated Oct 8, 2024

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