DESCRIPTION

Package: grcMalaria
Type: Package
Title: Package for processing and analyzing SpotMalaria Genetic Report Cards
Version: 3.0.0.9001
Date: 2025-02-10
Author: Olivo Miotto
Maintainer: Olivo Miotto <olivo@tropmedres.ac>
Description: Various functions for producing analysis results such as maps an reports from the Genetic Report Cards datasets delivered by SpotMalaria rpojects, such as GenRe-Mekong.
    Typical outputs include drug resistance prevalence maps, population genetic analyses such as PCA and NJ trees, and analyses of genetic barcodes such as barcode sharing networks, etc.
License: MIT + file LICENSE
LazyData: true
Imports: 
    grcMalariaGeodata (>= 0.4.0),
    Rcpp (>= 1.0.5), rlang,
    utils, stats, graphics, grDevices, stringi, digest, lubridate,
    readxl,
    ape, pegas, pcaMethods,
    igraph,
    sf, ggplot2 (>= 3.0.0), ggrepel, ggforce, cowplot, ggpubr, scatterpie
Depends: 
    R (>= 3.5.0)
LinkingTo: Rcpp
RoxygenNote: 7.3.1
Encoding: UTF-8