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Package dir lock doesn't work as expected #1429

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grst opened this issue Feb 1, 2022 · 3 comments
Open

Package dir lock doesn't work as expected #1429

grst opened this issue Feb 1, 2022 · 3 comments
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type::bug Something isn't working

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@grst
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grst commented Feb 1, 2022

From #739 I understood that in #894 a lockfile mechanism was introduced that should enable multiple mamba create commands to run in parallel.

However, this doesn't seem to work for me. When I create two environments in parallel, both processes start downloading packages concurrently instead of waiting for the lock to be released which leads to inconsistencies and finally, a failure:

error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/r-testthat-3.1.2-r41h03ef668_0.tar.bz2"
    Expected: f472c93f5fcc8ede1c4789369ca5c357d5fde5a98de963bb6be6f14651142b23
    Actual: 8f62d4455a15508487548baff427409acf1fa67b0dbcb012c4a700f052bfbd0e
[...]

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1080, in __call__
        return func(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 921, in exception_converter
        raise e
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 915, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 869, in _wrapped_main
        result = do_call(args, p)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 738, in do_call
        exit_code = create(args, parser)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 614, in create
        return install(args, parser, "create")
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 562, in install
        downloaded = transaction.prompt(repos)
    RuntimeError: Found incorrect download: proj. Aborting

I am running mamba 0.20.0, see also the full error messages below.

To reproduce

# clear package cache to avoid all packages are downloaded already
conda clean -af

# Run in terminal 1
mamba create --mkdir --yes --quiet --prefix /tmp/env1 conda-forge::r-base=4.1.2 conda-forge::r-docopt=0.7.1 conda-forge::r-conflicted=1.1.0 conda-forge::r-readr=2.1.1 conda-forge::dplyr=1.0.7 bioconda::bioconductor-enhancedvolcano=1.12.0

# Run in parallel, in terminal 2
mamba create --mkdir --yes --quiet --prefix /tmp/env2 conda-forge::r-base=4.1.2 conda-forge::r-docopt=0.7.1 conda-forge::r-conflicted=1.1.0 conda-forge::r-readr=2.1.1 conda-forge::dplyr=1.0.7 bioconda::bioconductor-enhancedvolcano=1.12.0

Full error messages

Terminal 1

error    Selected channel specific (or force-reinstall) job, but package is not available from channel. Solve job will fail.
warning  Package tarball '/home/sturm/anaconda3/pkgs/sysroot_linux-64-2.12-he073ed8_15.tar.bz2' is invalid
warning  Package tarball '/home/sturm/anaconda3/pkgs/binutils_impl_linux-64-2.36.1-h193b22a_2.tar.bz2' is invalid
warning  Package tarball '/home/sturm/anaconda3/pkgs/gxx_impl_linux-64-9.4.0-h03d3576_12.tar.bz2' is invalid
warning  Package tarball '/home/sturm/anaconda3/pkgs/r-rcpp-1.0.8-r41h03ef668_0.tar.bz2' is invalid
warning  Package tarball '/home/sturm/anaconda3/pkgs/r-mass-7.3_55-r41hcfec24a_0.tar.bz2' is invalid
  Package                              Version  Build                Channel                    Size
──────────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
──────────────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                          0.1  conda_forge          conda-forge/linux-64     Cached
  + _openmp_mutex                          4.5  1_gnu                conda-forge/linux-64      22 KB
  + _r-mutex                             1.0.1  anacondar_1          conda-forge/noarch         3 KB
  + binutils_impl_linux-64              2.36.1  h193b22a_2           conda-forge/linux-64      10 MB
  + binutils_linux-64                     2.36  hf3e587d_4           conda-forge/linux-64     Cached
  + bioconductor-enhancedvolcano        1.12.0  r41hdfd78af_0        bioconda/noarch            5 MB
  + bwidget                             1.9.14  ha770c72_1           conda-forge/linux-64     120 KB
  + bzip2                                1.0.8  h7f98852_4           conda-forge/linux-64     Cached
  + c-ares                              1.18.1  h7f98852_0           conda-forge/linux-64     113 KB
  + ca-certificates                  2021.10.8  ha878542_0           conda-forge/linux-64     139 KB
  + cairo                               1.16.0  ha00ac49_1009        conda-forge/linux-64       1 MB
  + curl                                7.81.0  h494985f_0           conda-forge/linux-64      90 KB
  + font-ttf-dejavu-sans-mono             2.37  hab24e00_0           conda-forge/noarch       388 KB
  + font-ttf-inconsolata                 3.000  h77eed37_0           conda-forge/noarch       Cached
  + font-ttf-source-code-pro             2.038  h77eed37_0           conda-forge/noarch       684 KB
  + font-ttf-ubuntu                       0.83  hab24e00_0           conda-forge/noarch         2 MB
  + fontconfig                         2.13.94  ha180cfb_0           conda-forge/linux-64     323 KB
  + fonts-conda-ecosystem                    1  0                    conda-forge/noarch         4 KB
  + fonts-conda-forge                        1  0                    conda-forge/noarch         4 KB
  + freetype                            2.10.4  h0708190_1           conda-forge/linux-64     890 KB
  + fribidi                             1.0.10  h36c2ea0_0           conda-forge/linux-64     112 KB
  + gcc_impl_linux-64                    9.4.0  h03d3576_12          conda-forge/linux-64      43 MB
  + gcc_linux-64                         9.4.0  h391b98a_4           conda-forge/linux-64      24 KB
  + gettext                           0.19.8.1  h73d1719_1008        conda-forge/linux-64       4 MB
  + gfortran_impl_linux-64               9.4.0  h0003116_12          conda-forge/linux-64      15 MB
  + gfortran_linux-64                    9.4.0  hf0ab688_4           conda-forge/linux-64      24 KB
  + graphite2                           1.3.13  h58526e2_1001        conda-forge/linux-64     102 KB
  + gsl                                    2.7  he838d99_0           conda-forge/linux-64     Cached
  + gxx_impl_linux-64                    9.4.0  h03d3576_12          conda-forge/linux-64      11 MB
  + gxx_linux-64                         9.4.0  h0316aca_4           conda-forge/linux-64     Cached
  + harfbuzz                             3.3.1  hb4a5f5f_0           conda-forge/linux-64       2 MB
  + icu                                   69.1  h9c3ff4c_0           conda-forge/linux-64      13 MB
  + jbig                                   2.1  h7f98852_2003        conda-forge/linux-64      43 KB
  + jpeg                                    9e  h7f98852_0           conda-forge/linux-64     Cached
  + kernel-headers_linux-64             2.6.32  he073ed8_15          conda-forge/noarch       Cached
  + krb5                                1.19.2  h48eae69_3           conda-forge/linux-64     Cached
  + ld_impl_linux-64                    2.36.1  hea4e1c9_2           conda-forge/linux-64     Cached
  + lerc                                   3.0  h9c3ff4c_0           conda-forge/linux-64     Cached
  + libblas                              3.9.0  13_linux64_openblas  conda-forge/linux-64     Cached
  + libcblas                             3.9.0  13_linux64_openblas  conda-forge/linux-64      12 KB
  + libcurl                             7.81.0  h494985f_0           conda-forge/linux-64     Cached
  + libdeflate                             1.8  h7f98852_0           conda-forge/linux-64      67 KB
  + libedit                       3.1.20191231  he28a2e2_2           conda-forge/linux-64     121 KB
  + libev                                 4.33  h516909a_1           conda-forge/linux-64     104 KB
  + libffi                               3.4.2  h7f98852_5           conda-forge/linux-64     Cached
  + libgcc-devel_linux-64                9.4.0  hd854feb_12          conda-forge/linux-64     Cached
  + libgcc-ng                           11.2.0  h1d223b6_12          conda-forge/linux-64     Cached
  + libgfortran-ng                      11.2.0  h69a702a_12          conda-forge/linux-64      19 KB
  + libgfortran5                        11.2.0  h5c6108e_12          conda-forge/linux-64     Cached
  + libglib                             2.70.2  h174f98d_1           conda-forge/linux-64     Cached
  + libgomp                             11.2.0  h1d223b6_12          conda-forge/linux-64     426 KB
  + libiconv                              1.16  h516909a_0           conda-forge/linux-64       1 MB
  + liblapack                            3.9.0  13_linux64_openblas  conda-forge/linux-64      12 KB
  + libnghttp2                          1.46.0  ha19adfc_0           conda-forge/linux-64     801 KB
  + libopenblas                         0.3.18  pthreads_h8fe5266_0  conda-forge/linux-64      10 MB
  + libpng                              1.6.37  h21135ba_2           conda-forge/linux-64     306 KB
  + libsanitizer                         9.4.0  h79bfe98_12          conda-forge/linux-64     Cached
  + libssh2                             1.10.0  ha35d2d1_2           conda-forge/linux-64     Cached
  + libstdcxx-devel_linux-64             9.4.0  hd854feb_12          conda-forge/linux-64      10 MB
  + libstdcxx-ng                        11.2.0  he4da1e4_12          conda-forge/linux-64     Cached
  + libtiff                              4.3.0  h6f004c6_2           conda-forge/linux-64     614 KB
  + libuuid                             2.32.1  h7f98852_1000        conda-forge/linux-64     Cached
  + libwebp-base                         1.2.2  h7f98852_1           conda-forge/linux-64     824 KB
  + libxcb                                1.13  h7f98852_1004        conda-forge/linux-64     391 KB
  + libxml2                             2.9.12  h885dcf4_1           conda-forge/linux-64     760 KB
  + libzlib                             1.2.11  h36c2ea0_1013        conda-forge/linux-64      59 KB
  + lz4-c                                1.9.3  h9c3ff4c_1           conda-forge/linux-64     179 KB
  + make                                   4.3  hd18ef5c_1           conda-forge/linux-64     Cached
  + ncurses                                6.2  h58526e2_4           conda-forge/linux-64     985 KB
  + openssl                              3.0.0  h7f98852_2           conda-forge/linux-64     Cached
  + pango                               1.50.3  h9967ed3_0           conda-forge/linux-64     458 KB
  + pcre                                  8.45  h9c3ff4c_0           conda-forge/linux-64     253 KB
  + pcre2                                10.37  h032f7d1_0           conda-forge/linux-64       1 MB
  + pixman                              0.40.0  h36c2ea0_0           conda-forge/linux-64     627 KB
  + proj                                 8.2.1  h277dcde_0           conda-forge/linux-64       3 MB
  + pthread-stubs                          0.4  h36c2ea0_1001        conda-forge/linux-64     Cached
  + r-ash                               1.0_15  r41h859d828_1006     conda-forge/linux-64     Cached
  + r-askpass                              1.1  r41hcfec24a_2        conda-forge/linux-64      28 KB
  + r-assertthat                         0.2.1  r41hc72bb7e_2        conda-forge/noarch        70 KB
  + r-backports                          1.4.1  r41hcfec24a_0        conda-forge/linux-64     110 KB
  + r-base                               4.1.2  h2553ce4_1           conda-forge/linux-64      25 MB
  + r-base64enc                          0.1_3  r41hcfec24a_1004     conda-forge/linux-64     Cached
  + r-beeswarm                           0.4.0  r41hcfec24a_1        conda-forge/linux-64      87 KB
  + r-bit                                4.0.4  r41hcfec24a_0        conda-forge/linux-64     613 KB
  + r-bit64                              4.0.5  r41hcfec24a_0        conda-forge/linux-64     506 KB
  + r-brio                               1.1.3  r41hcfec24a_0        conda-forge/linux-64     Cached
  + r-cachem                             1.0.6  r41hcfec24a_0        conda-forge/linux-64      72 KB
  + r-cairo                             1.5_14  r41hcfec24a_0        conda-forge/linux-64      98 KB
  + r-callr                              3.7.0  r41hc72bb7e_0        conda-forge/noarch       439 KB
  + r-cli                                3.1.1  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-clipr                              0.7.1  r41hc72bb7e_0        conda-forge/noarch        65 KB
  + r-colorspace                         2.0_2  r41hcfec24a_0        conda-forge/linux-64       3 MB
  + r-conflicted                         1.1.0  r41hc72bb7e_0        conda-forge/noarch        66 KB
  + r-cpp11                              0.4.2  r41hc72bb7e_0        conda-forge/noarch       245 KB
  + r-crayon                             1.4.2  r41hc72bb7e_0        conda-forge/noarch       161 KB
  + r-crosstalk                          1.2.0  r41hc72bb7e_0        conda-forge/noarch       368 KB
  + r-curl                               4.3.2  r41hcfec24a_0        conda-forge/linux-64     Cached
  + r-data.table                        1.14.2  r41hcfec24a_0        conda-forge/linux-64       2 MB
  + r-desc                               1.4.0  r41hc72bb7e_0        conda-forge/noarch       557 KB
  + r-diffobj                            0.3.5  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-digest                            0.6.29  r41h03ef668_0        conda-forge/linux-64     208 KB
  + r-docopt                             0.7.1  r41hc72bb7e_1        conda-forge/noarch       263 KB
  + r-dplyr                              1.0.7  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-ellipsis                           0.3.2  r41hcfec24a_0        conda-forge/linux-64      42 KB
  + r-evaluate                            0.14  r41hc72bb7e_2        conda-forge/noarch        81 KB
  + r-extrafont                           0.17  r41ha770c72_1002     conda-forge/noarch        62 KB
  + r-extrafontdb                          1.0  r41hc72bb7e_1003     conda-forge/noarch        19 KB
  + r-fansi                              1.0.2  r41hcfec24a_0        conda-forge/linux-64     322 KB
  + r-farver                             2.1.0  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-fastmap                            1.1.0  r41h03ef668_0        conda-forge/linux-64      68 KB
  + r-generics                           0.1.2  r41hc72bb7e_0        conda-forge/noarch        91 KB
  + r-ggalt                              0.4.0  r41ha770c72_2        conda-forge/noarch         2 MB
  + r-ggbeeswarm                         0.6.0  r41ha770c72_1003     conda-forge/noarch         1 MB
  + r-ggplot2                            3.3.5  r41hc72bb7e_0        conda-forge/noarch         4 MB
  + r-ggrastr                            1.0.1  r41hc72bb7e_0        conda-forge/noarch         2 MB
  + r-ggrepel                            0.9.1  r41h03ef668_0        conda-forge/linux-64     429 KB
  + r-glue                               1.6.1  r41hcfec24a_0        conda-forge/linux-64     154 KB
  + r-gtable                             0.3.0  r41hc72bb7e_3        conda-forge/noarch       423 KB
  + r-hexbin                            1.28.2  r41h859d828_0        conda-forge/linux-64       1 MB
  + r-hms                                1.1.1  r41hc72bb7e_0        conda-forge/noarch       106 KB
  + r-htmltools                          0.5.2  r41h03ef668_0        conda-forge/linux-64     345 KB
  + r-htmlwidgets                        1.5.4  r41hc72bb7e_0        conda-forge/noarch       808 KB
  + r-httr                               1.4.2  r41hc72bb7e_0        conda-forge/noarch       496 KB
  + r-isoband                            0.2.5  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-jsonlite                           1.7.3  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-kernsmooth                       2.23_20  r41h742201e_0        conda-forge/linux-64     104 KB
  + r-labeling                           0.4.2  r41hc72bb7e_1        conda-forge/noarch        67 KB
  + r-later                              1.2.0  r41h03ef668_0        conda-forge/linux-64     144 KB
  + r-lattice                          0.20_45  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-lazyeval                           0.2.2  r41hcfec24a_2        conda-forge/linux-64     Cached
  + r-lifecycle                          1.0.1  r41hc72bb7e_0        conda-forge/noarch       109 KB
  + r-magrittr                           2.0.2  r41hcfec24a_0        conda-forge/linux-64     Cached
  + r-maps                               3.4.0  r41hcfec24a_0        conda-forge/linux-64       3 MB
  + r-mass                              7.3_55  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-matrix                             1.4_0  r41he454529_0        conda-forge/linux-64       5 MB
  + r-memoise                            2.0.1  r41hc72bb7e_0        conda-forge/noarch        57 KB
  + r-mgcv                              1.8_38  r41he454529_0        conda-forge/linux-64       3 MB
  + r-mime                                0.12  r41hcfec24a_0        conda-forge/linux-64      51 KB
  + r-munsell                            0.5.0  r41hc72bb7e_1004     conda-forge/noarch       247 KB
  + r-nlme                             3.1_155  r41h859d828_0        conda-forge/linux-64       2 MB
  + r-openssl                            1.4.6  r41he82ab30_0        conda-forge/linux-64       1 MB
  + r-pillar                             1.7.0  r41hc72bb7e_0        conda-forge/noarch       706 KB
  + r-pkgconfig                          2.0.3  r41hc72bb7e_1        conda-forge/noarch        25 KB
  + r-pkgload                            1.2.4  r41h03ef668_0        conda-forge/linux-64     172 KB
  + r-plotly                            4.10.0  r41hc72bb7e_0        conda-forge/noarch         3 MB
  + r-png                                0.1_7  r41hcfec24a_1004     conda-forge/linux-64      58 KB
  + r-praise                             1.0.0  r41hc72bb7e_1005     conda-forge/noarch        24 KB
  + r-prettyunits                        1.1.1  r41hc72bb7e_1        conda-forge/noarch        41 KB
  + r-processx                           3.5.2  r41hcfec24a_0        conda-forge/linux-64     314 KB
  + r-progress                           1.2.2  r41hc72bb7e_2        conda-forge/noarch        91 KB
  + r-proj4                             1.0_11  r41h0ae476a_0        conda-forge/linux-64     Cached
  + r-promises                         1.2.0.1  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-ps                                 1.6.0  r41hcfec24a_0        conda-forge/linux-64     299 KB
  + r-purrr                              0.3.4  r41hcfec24a_1        conda-forge/linux-64     410 KB
  + r-r6                                 2.5.1  r41hc72bb7e_0        conda-forge/noarch        89 KB
  + r-ragg                               1.2.1  r41h35ef149_0        conda-forge/linux-64     530 KB
  + r-rcolorbrewer                       1.1_2  r41h785f33e_1003     conda-forge/noarch        64 KB
  + r-rcpp                               1.0.8  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-readr                              2.1.1  r41h03ef668_0        conda-forge/linux-64     877 KB
  + r-rematch2                           2.1.2  r41hc72bb7e_1        conda-forge/noarch        52 KB
  + r-rlang                             0.4.12  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-rprojroot                          2.0.2  r41hc72bb7e_0        conda-forge/noarch       110 KB
  + r-rstudioapi                          0.13  r41hc72bb7e_0        conda-forge/noarch       281 KB
  + r-rttf2pt1                           1.3.9  r41hcfec24a_0        conda-forge/linux-64     111 KB
  + r-scales                             1.1.1  r41hc72bb7e_0        conda-forge/noarch       557 KB
  + r-sys                                  3.4  r41hcfec24a_0        conda-forge/linux-64     Cached
  + r-systemfonts                        1.0.3  r41hef9c87a_0        conda-forge/linux-64     283 KB
  + r-testthat                           3.1.2  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-textshaping                        0.3.6  r41hcb6d10c_0        conda-forge/linux-64     130 KB
  + r-tibble                             3.1.6  r41hcfec24a_0        conda-forge/linux-64     774 KB
  + r-tidyr                              1.2.0  r41h03ef668_0        conda-forge/linux-64     845 KB
  + r-tidyselect                         1.1.1  r41hc72bb7e_0        conda-forge/linux-64     195 KB
  + r-tzdb                               0.2.0  r41h03ef668_0        conda-forge/linux-64     523 KB
  + r-utf8                               1.2.2  r41hcfec24a_0        conda-forge/linux-64     162 KB
  + r-vctrs                              0.3.8  r41hcfec24a_1        conda-forge/linux-64       1 MB
  + r-vipor                              0.4.5  r41hc72bb7e_1003     conda-forge/noarch         4 MB
  + r-viridislite                        0.4.0  r41hc72bb7e_0        conda-forge/noarch         1 MB
  + r-vroom                              1.5.7  r41h03ef668_0        conda-forge/linux-64     998 KB
  + r-waldo                              0.3.1  r41hc72bb7e_0        conda-forge/noarch       103 KB
  + r-withr                              2.4.3  r41hc72bb7e_0        conda-forge/noarch       225 KB
  + r-yaml                               2.2.2  r41hcfec24a_0        conda-forge/linux-64     120 KB
  + readline                               8.1  h46c0cb4_0           conda-forge/linux-64     Cached
  + sed                                    4.8  he412f7d_0           conda-forge/linux-64     264 KB
  + sqlite                              3.37.0  h9cd32fc_0           conda-forge/linux-64       1 MB
  + sysroot_linux-64                      2.12  he073ed8_15          conda-forge/noarch        31 MB
  + tk                                  8.6.11  h27826a3_1           conda-forge/linux-64     Cached
  + tktable                               2.10  hb7b940f_3           conda-forge/linux-64      89 KB
  + xorg-kbproto                         1.0.7  h7f98852_1002        conda-forge/linux-64     Cached
  + xorg-libice                         1.0.10  h7f98852_0           conda-forge/linux-64      58 KB
  + xorg-libsm                           1.2.3  hd9c2040_1000        conda-forge/linux-64      26 KB
  + xorg-libx11                          1.7.2  h7f98852_0           conda-forge/linux-64     Cached
  + xorg-libxau                          1.0.9  h7f98852_0           conda-forge/linux-64      13 KB
  + xorg-libxdmcp                        1.1.3  h7f98852_0           conda-forge/linux-64      19 KB
  + xorg-libxext                         1.3.4  h7f98852_1           conda-forge/linux-64      54 KB
  + xorg-libxrender                     0.9.10  h7f98852_1003        conda-forge/linux-64     Cached
  + xorg-libxt                           1.2.1  h7f98852_2           conda-forge/linux-64     375 KB
  + xorg-renderproto                    0.11.1  h7f98852_1002        conda-forge/linux-64       9 KB
  + xorg-xextproto                       7.3.0  h7f98852_1002        conda-forge/linux-64     Cached
  + xorg-xproto                         7.0.31  h7f98852_1007        conda-forge/linux-64      73 KB
  + xz                                   5.2.5  h516909a_1           conda-forge/linux-64     343 KB
  + zlib                                1.2.11  h36c2ea0_1013        conda-forge/linux-64      86 KB
  + zstd                                 1.5.2  ha95c52a_0           conda-forge/linux-64     458 KB

  Summary:

  Install: 202 packages

  Total download: 273 MB

──────────────────────────────────────────────────────────────────────────────────────────────────────

error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/libstdcxx-devel_linux-64-9.4.0-hd854feb_12.tar.bz2"
    Expected: 4f0e7ecaae9b7076792fbf23afdfa41f2d62aef06190594e7a6425b7e1d0f2e7
    Actual: 6bb2d86a0c279a10039f207bb8724b20a3ff337f001acce86065f5343bc34735
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/libopenblas-0.3.18-pthreads_h8fe5266_0.tar.bz2"
    Expected: 6d67f0f7bda1503af83659ca45d8c8ba34d94091fa4cd5b1ecd85332c14db3cc
    Actual: 1b2f5ce9a964f91cc72e2a9358d1cb397264cc486b6fe1145747f7cfcaf08b8c
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/gcc_impl_linux-64-9.4.0-h03d3576_12.tar.bz2"
    Expected: eab54670521302bca405897cf3b4462838c19c452d84ce79c08e4f8aaea8c1fa
    Actual: 1dd832aa0fc5dd8e665d3801e01e054a0ad689f8f6fd53388130f7950642f587
    

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1080, in __call__
        return func(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 921, in exception_converter
        raise e
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 915, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 869, in _wrapped_main
        result = do_call(args, p)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 738, in do_call
        exit_code = create(args, parser)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 614, in create
        return install(args, parser, "create")
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 562, in install
        downloaded = transaction.prompt(repos)
    RuntimeError: Found incorrect download: libstdcxx-devel_linux-64. Aborting

`$ /home/sturm/anaconda3/condabin/mamba create --mkdir --yes --quiet --prefix /tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8asdf267b5afea7686b0592f9121d90bd5b7 conda-forge::r-base=4.1.2 conda-forge::r-docopt=0.7.1 conda-forge::r-conflicted=1.1.0 conda-forge::r-readr=2.1.1 conda-forge::dplyr=1.0.7 bioconda::bioconductor-enhancedvolcano=1.12.0`

  environment variables:
                 CIO_TEST=<not set>
   CONDA_BACKUP_ADDR2LINE=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          addr2line
          CONDA_BACKUP_AR=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-ar
          CONDA_BACKUP_AS=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-as
       CONDA_BACKUP_BUILD=x86_64-conda-linux-gnu
          CONDA_BACKUP_CC=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-cc
CONDA_BACKUP_CC_FOR_BUILD=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-cc
      CONDA_BACKUP_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-
                          strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_CMAKE_PREFIX_PATH=/home/sturm/anaconda3/envs/test_deseq2_2:/home/sturm/anaconda3/envs/te
                          st_deseq2_2/x86_64-conda-linux-gnu/sysroot/usr
CONDA_BACKUP_CONDA_BUILD_SYSROOT=/home/sturm/anaconda3/envs/test_deseq2_2/x86_64-conda-linux-
                          gnu/sysroot
CONDA_BACKUP_CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
CONDA_BACKUP_CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
         CONDA_BACKUP_CPP=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          cpp
    CONDA_BACKUP_CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
         CONDA_BACKUP_CXX=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-
                          gnu-c++
     CONDA_BACKUP_CXXFILT=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-
                          gnu-c++filt
    CONDA_BACKUP_CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0
                          -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-
                          strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_CXX_FOR_BUILD=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-
                          gnu-c++
CONDA_BACKUP_DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-
                          all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments
                          -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0
                          -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-
                          all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments
                          -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_DEBUG_FFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-
                          protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_DEBUG_FORTRANFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-
                          protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
     CONDA_BACKUP_ELFEDIT=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          elfedit
         CONDA_BACKUP_F77=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gfortran
         CONDA_BACKUP_F90=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gfortran
         CONDA_BACKUP_F95=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-
                          gnu-f95
          CONDA_BACKUP_FC=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gfortran
      CONDA_BACKUP_FFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-
                          protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
CONDA_BACKUP_FORTRANFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-
                          protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem
                          /home/sturm/anaconda3/envs/test_deseq2_2/include
         CONDA_BACKUP_GCC=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gcc
      CONDA_BACKUP_GCC_AR=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gcc-ar
      CONDA_BACKUP_GCC_NM=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gcc-nm
  CONDA_BACKUP_GCC_RANLIB=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gcc-ranlib
    CONDA_BACKUP_GFORTRAN=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gfortran
       CONDA_BACKUP_GPROF=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          gprof
         CONDA_BACKUP_GXX=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-
                          gnu-g++
        CONDA_BACKUP_HOST=x86_64-conda-linux-gnu
          CONDA_BACKUP_LD=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-ld
     CONDA_BACKUP_LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,
                          --disable-new-dtags -Wl,--gc-sections
                          -Wl,-rpath,/home/sturm/anaconda3/envs/test_deseq2_2/lib -Wl,-rpath-
                          link,/home/sturm/anaconda3/envs/test_deseq2_2/lib
                          -L/home/sturm/anaconda3/envs/test_deseq2_2/lib
     CONDA_BACKUP_LD_GOLD=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          ld.gold
          CONDA_BACKUP_NM=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-nm
     CONDA_BACKUP_OBJCOPY=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          objcopy
     CONDA_BACKUP_OBJDUMP=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          objdump
      CONDA_BACKUP_RANLIB=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          ranlib
     CONDA_BACKUP_READELF=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          readelf
        CONDA_BACKUP_SIZE=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          size
     CONDA_BACKUP_STRINGS=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          strings
       CONDA_BACKUP_STRIP=/home/sturm/anaconda3/envs/test_deseq2_2/bin/x86_64-conda-linux-gnu-
                          strip
CONDA_BACKUP__CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
 CONDA_BACKUP_build_alias=x86_64-conda-linux-gnu
  CONDA_BACKUP_host_alias=x86_64-conda-linux-gnu
        CONDA_DEFAULT_ENV=test_lock
                CONDA_EXE=/home/sturm/anaconda3/bin/conda
             CONDA_PREFIX=/home/sturm/anaconda3/envs/test_lock
           CONDA_PREFIX_1=/home/sturm/anaconda3
           CONDA_PREFIX_2=/home/sturm/anaconda3/envs/default
    CONDA_PROMPT_MODIFIER=(test_lock)
         CONDA_PYTHON_EXE=/home/sturm/anaconda3/bin/python
               CONDA_ROOT=/home/sturm/anaconda3
              CONDA_SHLVL=3
           CURL_CA_BUNDLE=<not set>
          MOZ_PLUGIN_PATH=/usr/lib/mozilla/plugins
                     PATH=/home/sturm/anaconda3/envs/test_lock/bin:/home/sturm/anaconda3/condabi
                          n:/home/sturm/dotfiles/bin:/home/sturm/bin:/home/sturm/bin:/home/sturm
                          /dotfiles/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/def
                          ault/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>
               WINDOWPATH=1

     active environment : test_lock
    active env location : /home/sturm/anaconda3/envs/test_lock
            shell level : 3
       user config file : /home/sturm/.condarc
 populated config files : /home/sturm/.condarc
          conda version : 4.11.0
    conda-build version : not installed
         python version : 3.7.10.final.0
       virtual packages : __linux=5.16.2=0
                          __glibc=2.33=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/sturm/anaconda3  (writable)
      conda av data dir : /home/sturm/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/sturm/anaconda3/pkgs
                          /home/sturm/.conda/pkgs
       envs directories : /home/sturm/anaconda3/envs
                          /home/sturm/.conda/envs
               platform : linux-64
             user-agent : conda/4.11.0 requests/2.27.1 CPython/3.7.10 Linux/5.16.2-arch1-1 arch/rolling glibc/2.33
                UID:GID : 1000:1000
             netrc file : /home/sturm/.netrc
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.

Terminal 2

error    Selected channel specific (or force-reinstall) job, but package is not available from channel. Solve job will fail.
  Package                              Version  Build                Channel                    Size
──────────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
──────────────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                          0.1  conda_forge          conda-forge/linux-64       3 KB
  + _openmp_mutex                          4.5  1_gnu                conda-forge/linux-64      22 KB
  + _r-mutex                             1.0.1  anacondar_1          conda-forge/noarch         3 KB
  + binutils_impl_linux-64              2.36.1  h193b22a_2           conda-forge/linux-64      10 MB
  + binutils_linux-64                     2.36  hf3e587d_4           conda-forge/linux-64      24 KB
  + bioconductor-enhancedvolcano        1.12.0  r41hdfd78af_0        bioconda/noarch            5 MB
  + bwidget                             1.9.14  ha770c72_1           conda-forge/linux-64     120 KB
  + bzip2                                1.0.8  h7f98852_4           conda-forge/linux-64     484 KB
  + c-ares                              1.18.1  h7f98852_0           conda-forge/linux-64     113 KB
  + ca-certificates                  2021.10.8  ha878542_0           conda-forge/linux-64     139 KB
  + cairo                               1.16.0  ha00ac49_1009        conda-forge/linux-64       1 MB
  + curl                                7.81.0  h494985f_0           conda-forge/linux-64      90 KB
  + font-ttf-dejavu-sans-mono             2.37  hab24e00_0           conda-forge/noarch       388 KB
  + font-ttf-inconsolata                 3.000  h77eed37_0           conda-forge/noarch        94 KB
  + font-ttf-source-code-pro             2.038  h77eed37_0           conda-forge/noarch       684 KB
  + font-ttf-ubuntu                       0.83  hab24e00_0           conda-forge/noarch         2 MB
  + fontconfig                         2.13.94  ha180cfb_0           conda-forge/linux-64     323 KB
  + fonts-conda-ecosystem                    1  0                    conda-forge/noarch         4 KB
  + fonts-conda-forge                        1  0                    conda-forge/noarch         4 KB
  + freetype                            2.10.4  h0708190_1           conda-forge/linux-64     890 KB
  + fribidi                             1.0.10  h36c2ea0_0           conda-forge/linux-64     112 KB
  + gcc_impl_linux-64                    9.4.0  h03d3576_12          conda-forge/linux-64      43 MB
  + gcc_linux-64                         9.4.0  h391b98a_4           conda-forge/linux-64      24 KB
  + gettext                           0.19.8.1  h73d1719_1008        conda-forge/linux-64       4 MB
  + gfortran_impl_linux-64               9.4.0  h0003116_12          conda-forge/linux-64      15 MB
  + gfortran_linux-64                    9.4.0  hf0ab688_4           conda-forge/linux-64      24 KB
  + graphite2                           1.3.13  h58526e2_1001        conda-forge/linux-64     102 KB
  + gsl                                    2.7  he838d99_0           conda-forge/linux-64       3 MB
  + gxx_impl_linux-64                    9.4.0  h03d3576_12          conda-forge/linux-64      11 MB
  + gxx_linux-64                         9.4.0  h0316aca_4           conda-forge/linux-64      24 KB
  + harfbuzz                             3.3.1  hb4a5f5f_0           conda-forge/linux-64       2 MB
  + icu                                   69.1  h9c3ff4c_0           conda-forge/linux-64      13 MB
  + jbig                                   2.1  h7f98852_2003        conda-forge/linux-64      43 KB
  + jpeg                                    9e  h7f98852_0           conda-forge/linux-64     269 KB
  + kernel-headers_linux-64             2.6.32  he073ed8_15          conda-forge/noarch       707 KB
  + krb5                                1.19.2  h48eae69_3           conda-forge/linux-64       1 MB
  + ld_impl_linux-64                    2.36.1  hea4e1c9_2           conda-forge/linux-64     667 KB
  + lerc                                   3.0  h9c3ff4c_0           conda-forge/linux-64     216 KB
  + libblas                              3.9.0  13_linux64_openblas  conda-forge/linux-64      12 KB
  + libcblas                             3.9.0  13_linux64_openblas  conda-forge/linux-64      12 KB
  + libcurl                             7.81.0  h494985f_0           conda-forge/linux-64     340 KB
  + libdeflate                             1.8  h7f98852_0           conda-forge/linux-64      67 KB
  + libedit                       3.1.20191231  he28a2e2_2           conda-forge/linux-64     121 KB
  + libev                                 4.33  h516909a_1           conda-forge/linux-64     104 KB
  + libffi                               3.4.2  h7f98852_5           conda-forge/linux-64      57 KB
  + libgcc-devel_linux-64                9.4.0  hd854feb_12          conda-forge/linux-64       4 MB
  + libgcc-ng                           11.2.0  h1d223b6_12          conda-forge/linux-64     904 KB
  + libgfortran-ng                      11.2.0  h69a702a_12          conda-forge/linux-64      19 KB
  + libgfortran5                        11.2.0  h5c6108e_12          conda-forge/linux-64       2 MB
  + libglib                             2.70.2  h174f98d_1           conda-forge/linux-64       3 MB
  + libgomp                             11.2.0  h1d223b6_12          conda-forge/linux-64     426 KB
  + libiconv                              1.16  h516909a_0           conda-forge/linux-64       1 MB
  + liblapack                            3.9.0  13_linux64_openblas  conda-forge/linux-64      12 KB
  + libnghttp2                          1.46.0  ha19adfc_0           conda-forge/linux-64     801 KB
  + libopenblas                         0.3.18  pthreads_h8fe5266_0  conda-forge/linux-64      10 MB
  + libpng                              1.6.37  h21135ba_2           conda-forge/linux-64     306 KB
  + libsanitizer                         9.4.0  h79bfe98_12          conda-forge/linux-64       7 MB
  + libssh2                             1.10.0  ha35d2d1_2           conda-forge/linux-64     233 KB
  + libstdcxx-devel_linux-64             9.4.0  hd854feb_12          conda-forge/linux-64      10 MB
  + libstdcxx-ng                        11.2.0  he4da1e4_12          conda-forge/linux-64       4 MB
  + libtiff                              4.3.0  h6f004c6_2           conda-forge/linux-64     614 KB
  + libuuid                             2.32.1  h7f98852_1000        conda-forge/linux-64      28 KB
  + libwebp-base                         1.2.2  h7f98852_1           conda-forge/linux-64     824 KB
  + libxcb                                1.13  h7f98852_1004        conda-forge/linux-64     391 KB
  + libxml2                             2.9.12  h885dcf4_1           conda-forge/linux-64     760 KB
  + libzlib                             1.2.11  h36c2ea0_1013        conda-forge/linux-64      59 KB
  + lz4-c                                1.9.3  h9c3ff4c_1           conda-forge/linux-64     179 KB
  + make                                   4.3  hd18ef5c_1           conda-forge/linux-64     507 KB
  + ncurses                                6.2  h58526e2_4           conda-forge/linux-64     985 KB
  + openssl                              3.0.0  h7f98852_2           conda-forge/linux-64       3 MB
  + pango                               1.50.3  h9967ed3_0           conda-forge/linux-64     458 KB
  + pcre                                  8.45  h9c3ff4c_0           conda-forge/linux-64     253 KB
  + pcre2                                10.37  h032f7d1_0           conda-forge/linux-64       1 MB
  + pixman                              0.40.0  h36c2ea0_0           conda-forge/linux-64     627 KB
  + proj                                 8.2.1  h277dcde_0           conda-forge/linux-64       3 MB
  + pthread-stubs                          0.4  h36c2ea0_1001        conda-forge/linux-64       5 KB
  + r-ash                               1.0_15  r41h859d828_1006     conda-forge/linux-64      49 KB
  + r-askpass                              1.1  r41hcfec24a_2        conda-forge/linux-64      28 KB
  + r-assertthat                         0.2.1  r41hc72bb7e_2        conda-forge/noarch        70 KB
  + r-backports                          1.4.1  r41hcfec24a_0        conda-forge/linux-64     110 KB
  + r-base                               4.1.2  h2553ce4_1           conda-forge/linux-64      25 MB
  + r-base64enc                          0.1_3  r41hcfec24a_1004     conda-forge/linux-64      44 KB
  + r-beeswarm                           0.4.0  r41hcfec24a_1        conda-forge/linux-64      87 KB
  + r-bit                                4.0.4  r41hcfec24a_0        conda-forge/linux-64     613 KB
  + r-bit64                              4.0.5  r41hcfec24a_0        conda-forge/linux-64     506 KB
  + r-brio                               1.1.3  r41hcfec24a_0        conda-forge/linux-64      40 KB
  + r-cachem                             1.0.6  r41hcfec24a_0        conda-forge/linux-64      72 KB
  + r-cairo                             1.5_14  r41hcfec24a_0        conda-forge/linux-64      98 KB
  + r-callr                              3.7.0  r41hc72bb7e_0        conda-forge/noarch       439 KB
  + r-cli                                3.1.1  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-clipr                              0.7.1  r41hc72bb7e_0        conda-forge/noarch        65 KB
  + r-colorspace                         2.0_2  r41hcfec24a_0        conda-forge/linux-64       3 MB
  + r-conflicted                         1.1.0  r41hc72bb7e_0        conda-forge/noarch        66 KB
  + r-cpp11                              0.4.2  r41hc72bb7e_0        conda-forge/noarch       245 KB
  + r-crayon                             1.4.2  r41hc72bb7e_0        conda-forge/noarch       161 KB
  + r-crosstalk                          1.2.0  r41hc72bb7e_0        conda-forge/noarch       368 KB
  + r-curl                               4.3.2  r41hcfec24a_0        conda-forge/linux-64     773 KB
  + r-data.table                        1.14.2  r41hcfec24a_0        conda-forge/linux-64       2 MB
  + r-desc                               1.4.0  r41hc72bb7e_0        conda-forge/noarch       557 KB
  + r-diffobj                            0.3.5  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-digest                            0.6.29  r41h03ef668_0        conda-forge/linux-64     208 KB
  + r-docopt                             0.7.1  r41hc72bb7e_1        conda-forge/noarch       263 KB
  + r-dplyr                              1.0.7  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-ellipsis                           0.3.2  r41hcfec24a_0        conda-forge/linux-64      42 KB
  + r-evaluate                            0.14  r41hc72bb7e_2        conda-forge/noarch        81 KB
  + r-extrafont                           0.17  r41ha770c72_1002     conda-forge/noarch        62 KB
  + r-extrafontdb                          1.0  r41hc72bb7e_1003     conda-forge/noarch        19 KB
  + r-fansi                              1.0.2  r41hcfec24a_0        conda-forge/linux-64     322 KB
  + r-farver                             2.1.0  r41h03ef668_0        conda-forge/linux-64       1 MB
  + r-fastmap                            1.1.0  r41h03ef668_0        conda-forge/linux-64      68 KB
  + r-generics                           0.1.2  r41hc72bb7e_0        conda-forge/noarch        91 KB
  + r-ggalt                              0.4.0  r41ha770c72_2        conda-forge/noarch         2 MB
  + r-ggbeeswarm                         0.6.0  r41ha770c72_1003     conda-forge/noarch         1 MB
  + r-ggplot2                            3.3.5  r41hc72bb7e_0        conda-forge/noarch         4 MB
  + r-ggrastr                            1.0.1  r41hc72bb7e_0        conda-forge/noarch         2 MB
  + r-ggrepel                            0.9.1  r41h03ef668_0        conda-forge/linux-64     429 KB
  + r-glue                               1.6.1  r41hcfec24a_0        conda-forge/linux-64     154 KB
  + r-gtable                             0.3.0  r41hc72bb7e_3        conda-forge/noarch       423 KB
  + r-hexbin                            1.28.2  r41h859d828_0        conda-forge/linux-64       1 MB
  + r-hms                                1.1.1  r41hc72bb7e_0        conda-forge/noarch       106 KB
  + r-htmltools                          0.5.2  r41h03ef668_0        conda-forge/linux-64     345 KB
  + r-htmlwidgets                        1.5.4  r41hc72bb7e_0        conda-forge/noarch       808 KB
  + r-httr                               1.4.2  r41hc72bb7e_0        conda-forge/noarch       496 KB
  + r-isoband                            0.2.5  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-jsonlite                           1.7.3  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-kernsmooth                       2.23_20  r41h742201e_0        conda-forge/linux-64     104 KB
  + r-labeling                           0.4.2  r41hc72bb7e_1        conda-forge/noarch        67 KB
  + r-later                              1.2.0  r41h03ef668_0        conda-forge/linux-64     144 KB
  + r-lattice                          0.20_45  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-lazyeval                           0.2.2  r41hcfec24a_2        conda-forge/linux-64     165 KB
  + r-lifecycle                          1.0.1  r41hc72bb7e_0        conda-forge/noarch       109 KB
  + r-magrittr                           2.0.2  r41hcfec24a_0        conda-forge/linux-64     215 KB
  + r-maps                               3.4.0  r41hcfec24a_0        conda-forge/linux-64       3 MB
  + r-mass                              7.3_55  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-matrix                             1.4_0  r41he454529_0        conda-forge/linux-64       5 MB
  + r-memoise                            2.0.1  r41hc72bb7e_0        conda-forge/noarch        57 KB
  + r-mgcv                              1.8_38  r41he454529_0        conda-forge/linux-64       3 MB
  + r-mime                                0.12  r41hcfec24a_0        conda-forge/linux-64      51 KB
  + r-munsell                            0.5.0  r41hc72bb7e_1004     conda-forge/noarch       247 KB
  + r-nlme                             3.1_155  r41h859d828_0        conda-forge/linux-64       2 MB
  + r-openssl                            1.4.6  r41he82ab30_0        conda-forge/linux-64       1 MB
  + r-pillar                             1.7.0  r41hc72bb7e_0        conda-forge/noarch       706 KB
  + r-pkgconfig                          2.0.3  r41hc72bb7e_1        conda-forge/noarch        25 KB
  + r-pkgload                            1.2.4  r41h03ef668_0        conda-forge/linux-64     172 KB
  + r-plotly                            4.10.0  r41hc72bb7e_0        conda-forge/noarch         3 MB
  + r-png                                0.1_7  r41hcfec24a_1004     conda-forge/linux-64      58 KB
  + r-praise                             1.0.0  r41hc72bb7e_1005     conda-forge/noarch        24 KB
  + r-prettyunits                        1.1.1  r41hc72bb7e_1        conda-forge/noarch        41 KB
  + r-processx                           3.5.2  r41hcfec24a_0        conda-forge/linux-64     314 KB
  + r-progress                           1.2.2  r41hc72bb7e_2        conda-forge/noarch        91 KB
  + r-proj4                             1.0_11  r41h0ae476a_0        conda-forge/linux-64      38 KB
  + r-promises                         1.2.0.1  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-ps                                 1.6.0  r41hcfec24a_0        conda-forge/linux-64     299 KB
  + r-purrr                              0.3.4  r41hcfec24a_1        conda-forge/linux-64     410 KB
  + r-r6                                 2.5.1  r41hc72bb7e_0        conda-forge/noarch        89 KB
  + r-ragg                               1.2.1  r41h35ef149_0        conda-forge/linux-64     530 KB
  + r-rcolorbrewer                       1.1_2  r41h785f33e_1003     conda-forge/noarch        64 KB
  + r-rcpp                               1.0.8  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-readr                              2.1.1  r41h03ef668_0        conda-forge/linux-64     877 KB
  + r-rematch2                           2.1.2  r41hc72bb7e_1        conda-forge/noarch        52 KB
  + r-rlang                             0.4.12  r41hcfec24a_0        conda-forge/linux-64       1 MB
  + r-rprojroot                          2.0.2  r41hc72bb7e_0        conda-forge/noarch       110 KB
  + r-rstudioapi                          0.13  r41hc72bb7e_0        conda-forge/noarch       281 KB
  + r-rttf2pt1                           1.3.9  r41hcfec24a_0        conda-forge/linux-64     111 KB
  + r-scales                             1.1.1  r41hc72bb7e_0        conda-forge/noarch       557 KB
  + r-sys                                  3.4  r41hcfec24a_0        conda-forge/linux-64      48 KB
  + r-systemfonts                        1.0.3  r41hef9c87a_0        conda-forge/linux-64     283 KB
  + r-testthat                           3.1.2  r41h03ef668_0        conda-forge/linux-64       2 MB
  + r-textshaping                        0.3.6  r41hcb6d10c_0        conda-forge/linux-64     130 KB
  + r-tibble                             3.1.6  r41hcfec24a_0        conda-forge/linux-64     774 KB
  + r-tidyr                              1.2.0  r41h03ef668_0        conda-forge/linux-64     845 KB
  + r-tidyselect                         1.1.1  r41hc72bb7e_0        conda-forge/linux-64     195 KB
  + r-tzdb                               0.2.0  r41h03ef668_0        conda-forge/linux-64     523 KB
  + r-utf8                               1.2.2  r41hcfec24a_0        conda-forge/linux-64     162 KB
  + r-vctrs                              0.3.8  r41hcfec24a_1        conda-forge/linux-64       1 MB
  + r-vipor                              0.4.5  r41hc72bb7e_1003     conda-forge/noarch         4 MB
  + r-viridislite                        0.4.0  r41hc72bb7e_0        conda-forge/noarch         1 MB
  + r-vroom                              1.5.7  r41h03ef668_0        conda-forge/linux-64     998 KB
  + r-waldo                              0.3.1  r41hc72bb7e_0        conda-forge/noarch       103 KB
  + r-withr                              2.4.3  r41hc72bb7e_0        conda-forge/noarch       225 KB
  + r-yaml                               2.2.2  r41hcfec24a_0        conda-forge/linux-64     120 KB
  + readline                               8.1  h46c0cb4_0           conda-forge/linux-64     295 KB
  + sed                                    4.8  he412f7d_0           conda-forge/linux-64     264 KB
  + sqlite                              3.37.0  h9cd32fc_0           conda-forge/linux-64       1 MB
  + sysroot_linux-64                      2.12  he073ed8_15          conda-forge/noarch        31 MB
  + tk                                  8.6.11  h27826a3_1           conda-forge/linux-64       3 MB
  + tktable                               2.10  hb7b940f_3           conda-forge/linux-64      89 KB
  + xorg-kbproto                         1.0.7  h7f98852_1002        conda-forge/linux-64      27 KB
  + xorg-libice                         1.0.10  h7f98852_0           conda-forge/linux-64      58 KB
  + xorg-libsm                           1.2.3  hd9c2040_1000        conda-forge/linux-64      26 KB
  + xorg-libx11                          1.7.2  h7f98852_0           conda-forge/linux-64     941 KB
  + xorg-libxau                          1.0.9  h7f98852_0           conda-forge/linux-64      13 KB
  + xorg-libxdmcp                        1.1.3  h7f98852_0           conda-forge/linux-64      19 KB
  + xorg-libxext                         1.3.4  h7f98852_1           conda-forge/linux-64      54 KB
  + xorg-libxrender                     0.9.10  h7f98852_1003        conda-forge/linux-64      32 KB
  + xorg-libxt                           1.2.1  h7f98852_2           conda-forge/linux-64     375 KB
  + xorg-renderproto                    0.11.1  h7f98852_1002        conda-forge/linux-64       9 KB
  + xorg-xextproto                       7.3.0  h7f98852_1002        conda-forge/linux-64      28 KB
  + xorg-xproto                         7.0.31  h7f98852_1007        conda-forge/linux-64      73 KB
  + xz                                   5.2.5  h516909a_1           conda-forge/linux-64     343 KB
  + zlib                                1.2.11  h36c2ea0_1013        conda-forge/linux-64      86 KB
  + zstd                                 1.5.2  ha95c52a_0           conda-forge/linux-64     458 KB

  Summary:

  Install: 202 packages

  Total download: 311 MB

──────────────────────────────────────────────────────────────────────────────────────────────────────

error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/r-testthat-3.1.2-r41h03ef668_0.tar.bz2"
    Expected: f472c93f5fcc8ede1c4789369ca5c357d5fde5a98de963bb6be6f14651142b23
    Actual: 8f62d4455a15508487548baff427409acf1fa67b0dbcb012c4a700f052bfbd0e
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/r-plotly-4.10.0-r41hc72bb7e_0.tar.bz2"
    Expected: c3382f0302d8f2befc2e846d968a058e205588718c01bdf3d3a16b489d65741e
    Actual: 3eecceba5fdc048607f094268652089c22a09b90f28d2ae6b12e418d7aa17ea4
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/r-ggrastr-1.0.1-r41hc72bb7e_0.tar.bz2"
    Expected: f6ee288ca4dfbab4feab8d20ea0d35346d0140e57cef2d94288900d749009903
    Actual: c5389e9526b80ea85660fc5696dc4b9d1440fdb01dac1181fb9c9825d1af7dd6
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/proj-8.2.1-h277dcde_0.tar.bz2"
    Expected: 9bbd2c7b22387a04462c12f84f0fa5190c953e8cb593ac2a8d15cf252d340e76
    Actual: cb4591daee1d9f26c3b4711bb606458106dce5afdfc2621a0065375256e075a7
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/gfortran_impl_linux-64-9.4.0-h0003116_12.tar.bz2"
    Expected: d49bdef53d949b6dcc6f5c1b55ec6dc4d67fd9f9f1b9a6abbf9b5adc1f849f31
    Actual: 321431297e8702c9fbeca245582bd10af3652754784cc6e3ed2e594f2708c86e
    
error    File not valid: SHA256 sum doesn't match expectation "/home/sturm/anaconda3/pkgs/r-base-4.1.2-h2553ce4_1.tar.bz2"
    Expected: da3e570822f47322ceea1e2d7c1750e6858f1310c4ad1dccc302d6b5788c7a1d
    Actual: 6669b0d6083ee25afaf2b9c23f51f996916a705e9382ba29ab309cbc7c4d4f0f
    

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1080, in __call__
        return func(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 921, in exception_converter
        raise e
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 915, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 869, in _wrapped_main
        result = do_call(args, p)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 738, in do_call
        exit_code = create(args, parser)
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 614, in create
        return install(args, parser, "create")
      File "/home/sturm/anaconda3/lib/python3.7/site-packages/mamba/mamba.py", line 562, in install
        downloaded = transaction.prompt(repos)
    RuntimeError: Found incorrect download: proj. Aborting

`$ /home/sturm/anaconda3/condabin/mamba create --mkdir --yes --quiet --prefix /tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b0592f9121d90bd5basdf7 conda-forge::r-base=4.1.2 conda-forge::r-docopt=0.7.1 conda-forge::r-conflicted=1.1.0 conda-forge::r-readr=2.1.1 conda-forge::dplyr=1.0.7 bioconda::bioconductor-enhancedvolcano=1.12.0`

  environment variables:
                 CIO_TEST=<not set>
        CMAKE_PREFIX_PATH=/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b059
                          2f9121d90bd5b7:/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-826
                          7b5afea7686b0592f9121d90bd5b7/x86_64-conda-linux-gnu/sysroot/usr
        CONDA_BACKUP_HOST=hochvogel
      CONDA_BUILD_SYSROOT=/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b059
                          2f9121d90bd5b7/x86_64-conda-linux-gnu/sysroot
        CONDA_DEFAULT_ENV=/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b059
                          2f9121d90bd5b7
                CONDA_EXE=/home/sturm/anaconda3/bin/conda
             CONDA_PREFIX=/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b059
                          2f9121d90bd5b7
           CONDA_PREFIX_1=/home/sturm/anaconda3
           CONDA_PREFIX_2=/home/sturm/anaconda3/envs/default
    CONDA_PROMPT_MODIFIER=(/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b05
                          92f9121d90bd5b7)
         CONDA_PYTHON_EXE=/home/sturm/anaconda3/bin/python
               CONDA_ROOT=/home/sturm/anaconda3
              CONDA_SHLVL=3
    CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
     CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
           CURL_CA_BUNDLE=<not set>
          MOZ_PLUGIN_PATH=/usr/lib/mozilla/plugins
                     PATH=/tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b059
                          2f9121d90bd5b7/bin:/home/sturm/anaconda3/condabin:/home/sturm/dotfiles
                          /bin:/home/sturm/bin:/home/sturm/bin:/home/sturm/dotfiles/bin:/usr/loc
                          al/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/default/bin:/usr/bin/site
                          _perl:/usr/bin/vendor_perl:/usr/bin/core_perl
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>
               WINDOWPATH=1

     active environment : /tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b0592f9121d90bd5b7
    active env location : /tmp/pytest_workflow_hwxk5qaf/deseq2/work/conda/env-8267b5afea7686b0592f9121d90bd5b7
            shell level : 3
       user config file : /home/sturm/.condarc
 populated config files : /home/sturm/.condarc
          conda version : 4.11.0
    conda-build version : not installed
         python version : 3.7.10.final.0
       virtual packages : __linux=5.16.2=0
                          __glibc=2.33=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/sturm/anaconda3  (writable)
      conda av data dir : /home/sturm/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/sturm/anaconda3/pkgs
                          /home/sturm/.conda/pkgs
       envs directories : /home/sturm/anaconda3/envs
                          /home/sturm/.conda/envs
               platform : linux-64
             user-agent : conda/4.11.0 requests/2.27.1 CPython/3.7.10 Linux/5.16.2-arch1-1 arch/rolling glibc/2.33
                UID:GID : 1000:1000
             netrc file : /home/sturm/.netrc
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.

Additional context

The problem occurs when running a workflow with nextflow, which automatically creates conda environments in parallel. cf nextflow-io/nextflow#1819
@mparry
Copy link
Contributor

mparry commented Feb 10, 2022

I see similar but failing in a different place:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.7/site-packages/conda/exceptions.py", line 1079, in __call__
    return func(*args, **kwargs)
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 926, in exception_converter
    raise e
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 920, in exception_converter
    exit_code = _wrapped_main(*args, **kwargs)
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 878, in _wrapped_main
    result = do_call(args, p)
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 757, in do_call
    exit_code = create(args, parser)
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 660, in create
    return install(args, parser, "create")
  File "/opt/conda/lib/python3.7/site-packages/mamba/mamba.py", line 532, in install
    index = load_channels(pool, channels, repos)
  File "/opt/conda/lib/python3.7/site-packages/mamba/utils.py", line 179, in load_channels
    repo = subdir.create_repo(pool)
RuntimeError: Could not read JSON repodata file (/opt/conda/pkgs/cache/843b4cb7.json) parse error line 505629

(That's with mamba 0.17.0.)

@grst grst mentioned this issue Mar 3, 2022
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@red8888
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red8888 commented Mar 15, 2022

Im seeing this same error when running mamba create and update commands in parallel

@jpfeuffer
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jpfeuffer commented Apr 27, 2022 •
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Same problem for us. See attempts in https://github.com/bigbio/quantms/runs/6202148480?check_suite_focus=true

The attempts actually show both errors mentioned here.

Also working with nextflow.

@jpfeuffer jpfeuffer mentioned this issue Apr 28, 2022
Closed
@jonashaag jonashaag added the type::bug Something isn't working label Sep 30, 2022
@rmittal87 rmittal87 mentioned this issue Sep 8, 2023
Open
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@jonashaag @red8888 @grst @jpfeuffer @mparry