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Bump the dev-dependencies group with 3 updates #670

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Bump the dev-dependencies group with 3 updates

Bump the dev-dependencies group with 3 updates #670

Workflow file for this run

.github/workflows/test.yml at 09557bc
name: CI
on:
push:
branches: [main]
pull_request:
branches: [main]
merge_group:
jobs:
no-environment-file:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-name: test
create-args: >-
python
cython
- run: |
micromamba info | grep -q "environment : test"
shell: bash -el {0}
environment-file:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: 'test/environment.yml'
- run: |
micromamba info | grep -q "environment : env-name"
shell: bash -el {0}
no-environment:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
- run: |
micromamba info | grep -q "environment : None (not found)"
shell: bash -el {0}
micromamba-old-version-1:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
micromamba-version: 1.4.5-0
environment-file: 'test/environment.yml'
- run: test "$(micromamba --version)" = 1.4.5
shell: bash -el {0}
micromamba-old-version-2:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
micromamba-version: 1.2.0-1 # this will throw a warning
environment-file: 'test/environment.yml'
- run: test "$(micromamba --version)" = 1.2.0
shell: bash -el {0}
micromamba-shell:
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: ''
environment-file: ''
create-args: pytest
environment-name: test
- run: |
pytest --version
python --version
shell: micromamba-shell {0}
bash:
strategy:
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: bash
environment-file: 'test/environment.yml'
- run: |
micromamba info | grep -q "environment : env-name"
shell: bash -el {0}
multiple-shell-init:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: >-
bash
powershell
environment-file: 'test/environment.yml'
- run: |
micromamba info | grep -q "environment : env-name"
shell: bash -el {0}
- name: micromamba info (pwsh)
run: micromamba info
shell: pwsh
# TODO: powershell equivalent of `micromamba info | grep -q "environment : env-name"`
cmd:
runs-on: windows-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: cmd.exe
environment-file: 'test/environment.yml'
- name: micromamba info (cmd.exe)
run: micromamba info
shell: cmd /C CALL {0}
# TODO: cmd equivalent of `micromamba info | grep -q "environment : env-name"`
powershell:
strategy:
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: powershell
environment-file: 'test/environment.yml'
- name: micromamba info (pwsh)
run: micromamba info
shell: pwsh
- name: micromamba info (powershell)
if: matrix.os == 'windows-latest'
run: micromamba info
shell: powershell
# TODO: powershell equivalent of `micromamba info | grep -q "environment : env-name"`
env-variable:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: 'test/environment.yml'
- run: | # this should work even without `bash -l {0}`
[ -n "$MAMBA_ROOT_PREFIX" ]
[ -n "$MAMBA_EXE" ]
[ -n "$CONDARC" ]
custom-condarc:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: 'test/environment.yml'
condarc-file: 'test/.condarc'
- run: | # this should only work when the pytorch channel is loaded, i.e., the custom condarc is used
micromamba search pytorch=2.0.0
micromamba search pytorch=2.0.0 | grep -q "pytorch 2.0.0 py3.10_cpu_0"
shell: bash -el {0}
conda-lock:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: 'test/conda-lock.yml'
environment-name: locked-env
- run: |
micromamba list | grep -q "python 3.11.3 h2755cc3_0_cpython conda-forge"
shell: bash -el {0}
comment-in-environment-file:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: 'test/environment2.yml'
- run: |
micromamba info | grep -q "environment : env-name2"
shell: bash -el {0}
- run: |
python --version | grep -q "Python 3.10.1"
# micromamba-shell uses the environment-name inferred by setup-micromamba
shell: micromamba-shell {0}
create-args-multiple-spaces-1:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-name: test
create-args: python pytest
- run: |
micromamba list | grep -q python
micromamba list | grep -q pytest
shell: bash -el {0}
create-args-multiple-spaces-2:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
environment-file: test/environment2.yml
create-args: -c bioconda pytest
- run: |
micromamba list | grep -q python
micromamba list | grep -q pytest
shell: bash -el {0}
output-environment-path-env-file:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
id: setup-micromamba
with:
environment-file: 'test/environment.yml'
- run: |
test ${{ steps.setup-micromamba.outputs.environment-path }} = "$HOME/micromamba/envs/env-name"
ls ${{ steps.setup-micromamba.outputs.environment-path }}
output-environment-path-env-name-overwrite:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
id: setup-micromamba
with:
environment-file: 'test/environment.yml'
environment-name: test
- run: |
test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/micromamba/envs/test
ls "${{ steps.setup-micromamba.outputs.environment-path }}"
output-environment-path-custom-root-prefix:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
id: setup-micromamba
with:
environment-name: test
micromamba-root-path: /home/runner/custom-micromamba-root-prefix
- run: |
test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/custom-micromamba-root-prefix/envs/test
ls "${{ steps.setup-micromamba.outputs.environment-path }}"
output-no-environment-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
id: setup-micromamba
- run: |
test "${{ steps.setup-micromamba.outputs.environment-path }}" = ""
check-micromamba-on-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./
with:
init-shell: none
environment-file: test/environment.yml
- run: |
echo $PATH
echo "$(which micromamba)"
echo "$(type micromamba)"
echo "$(which micromamba-shell)"
echo "${{ runner.temp }}"
which micromamba | grep /home/runner/micromamba-bin/micromamba
type micromamba | grep "micromamba is /home/runner/micromamba-bin/micromamba"
which micromamba-shell | grep "${{ runner.temp }}/setup-micromamba/micromamba-shell"
shell: bash -el {0}
use-micromamba-from-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Download micromamba
run: |
curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o /usr/local/bin/micromamba
chmod +x /usr/local/bin/micromamba
which micromamba
- uses: ./
with:
environment-file: test/environment.yml
download-micromamba: false
- run: |
micromamba info | grep -q "environment : env-name"
shell: bash -elo pipefail {0}
no-download-with-custom-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Download micromamba
run: |
mkdir -p "$HOME/not-on-path/bin"
curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o "$HOME/not-on-path/bin/micromamba"
chmod +x "$HOME/not-on-path/bin/micromamba"
- uses: ./
with:
environment-file: test/environment.yml
download-micromamba: false
micromamba-binary-path: ~/not-on-path/bin/micromamba
- run: |
micromamba info | grep -q "environment : env-name"
which micromamba | grep not-on-path/bin
shell: bash -elo pipefail {0}
incorrect-condarc:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
# this should produce a warning
- uses: ./
with:
condarc-file: test/.condarc.2
- run: |
! micromamba info | grep .condarc.2
shell: bash -elo pipefail {0}
correct-condarc:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
# this should produce a warning
- uses: ./
with:
condarc-file: test/.condarc.yml
- run: |
micromamba info | grep .condarc.yml
shell: bash -elo pipefail {0}
# not properly testable
# https://github.com/actions/runner/issues/2347
# https://github.com/orgs/community/discussions/15452
# create-args-no-env-name:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# create-args: >-
# python
# pytest
# - run: exit 1
# if: success()
# incorrect-version:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# micromamba-version: '1.2.3'
# - run: exit 1
# if: success()
# incorrect-log-level:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# log-level: foo
# - run: exit 1
# if: success()