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Binary for new Apple M1/M2 processors? #2261

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AlWa1 opened this issue Sep 22, 2023 · 2 comments
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Binary for new Apple M1/M2 processors? #2261

AlWa1 opened this issue Sep 22, 2023 · 2 comments

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@AlWa1
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AlWa1 commented Sep 22, 2023

I've recently acquired a new-generation MacBook equipped with an M2 processor and was wondering if you provide binaries optimised for these new processors. It appears that the current system is utilising the integrated emulator software Rosetta to run the Intel-based code.

Thank you in advance!

@skoren
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skoren commented Sep 27, 2023

Duplicate with #2260, check for updates in that issue instead. Right now canu does not build on ARM but we may add support for this in the near future. It requires updating some library dependencies built into canu.

@YoshitakaMo
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Hi, I've updated brewsci/bio/canu to ver. 2.2 (brew install brewsci/bio/canu). It works on Apple silicon and Linux OS. canu on Apple M2 processor could complete the tutorial case in 15 minutes:

curl -L -o pacbio.fastq http://gembox.cbcb.umd.edu/mhap/raw/ecoli_p6_25x.filtered.fastq
canu -p ecoli -d ecoli-pacbio \
 genomeSize=4.8m \
 -pacbio pacbio.fastq

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