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Enable canu bamoutput branch. Update Makefile to agree with latest, …
compile and e.coli #574: Commit 97ed6bd pushed by brianwalenz
July 7, 2024 21:39 2m 5s bamoutput
July 7, 2024 21:39 2m 5s
add bam output support
compile and e.coli #573: Commit 38a7109 pushed by skoren
July 6, 2024 22:04 1m 51s graph_cleanup_code
July 6, 2024 22:04 1m 51s
some more fixes
compile and e.coli #572: Commit 1b4764b pushed by Dmitry-Antipov
July 5, 2024 21:37 6m 14s scaff_multimappers
July 5, 2024 21:37 6m 14s
compile and e.coli
compile and e.coli #571: by Dmitry-Antipov
July 5, 2024 20:05 6m 55s scaff_multimappers
July 5, 2024 20:05 6m 55s
Happy July4th
compile and e.coli #570: Commit 74c0006 pushed by Dmitry-Antipov
July 4, 2024 04:10 6m 48s scaff_multimappers
July 4, 2024 04:10 6m 48s
don't unroll low coverage loops
compile and e.coli #569: Commit 62b05a5 pushed by skoren
June 28, 2024 14:18 6m 38s graph_cleanup_code
June 28, 2024 14:18 6m 38s
use new popbubbles args
compile and e.coli #568: Commit 831c286 pushed by skoren
June 28, 2024 14:16 6m 33s graph_cleanup_code
June 28, 2024 14:16 6m 33s
don't unroll low coverage loops
compile and e.coli #567: Commit a0198ed pushed by skoren
June 28, 2024 13:47 11m 16s graph_cleanup_code
June 28, 2024 13:47 11m 16s
wip
compile and e.coli #566: Commit 892fab7 pushed by Dmitry-Antipov
June 27, 2024 15:46 7m 4s scaff_multimappers
June 27, 2024 15:46 7m 4s
miultimapper exp
compile and e.coli #565: Commit 0576983 pushed by Dmitry-Antipov
June 26, 2024 17:39 8m 51s scaff_multimappers
June 26, 2024 17:39 8m 51s
update sparsity to match Hi-C parameters
compile and e.coli #564: Commit 3538dcc pushed by skoren
June 25, 2024 22:25 7m 11s master
June 25, 2024 22:25 7m 11s
last things?
compile and e.coli #563: Commit 8b3b46b pushed by steven-solar
June 25, 2024 20:27 31s steven-consensusbams
June 25, 2024 20:27 31s
makefile fix
compile and e.coli #562: Commit cb2eb9b pushed by Dmitry-Antipov
June 20, 2024 16:28 6m 22s scaff2
June 20, 2024 16:28 6m 22s
mergef fixing
compile and e.coli #561: Commit 0189469 pushed by Dmitry-Antipov
June 20, 2024 15:26 16m 28s scaff2
June 20, 2024 15:26 16m 28s
makefile fix, chmod
compile and e.coli #560: Commit 9371d65 pushed by Dmitry-Antipov
June 20, 2024 14:57 6m 29s scaff2
June 20, 2024 14:57 6m 29s
median tuned
compile and e.coli #559: Commit 5cf01b3 pushed by Dmitry-Antipov
June 18, 2024 14:48 6m 44s master
June 18, 2024 14:48 6m 44s
tuning median coverage
compile and e.coli #558: Commit 4fd0b19 pushed by Dmitry-Antipov
June 18, 2024 14:18 1m 42s unassigned_fix
June 18, 2024 14:18 1m 42s
fix
compile and e.coli #557: Commit e428b62 pushed by Dmitry-Antipov
June 18, 2024 14:17 1m 42s unassigned_fix
June 18, 2024 14:17 1m 42s
tuning median coverage
compile and e.coli #556: Commit 994065c pushed by Dmitry-Antipov
June 18, 2024 12:18 9m 21s unassigned_fix
June 18, 2024 12:18 9m 21s
fix for unassigned
compile and e.coli #555: Commit a0684c9 pushed by Dmitry-Antipov
June 18, 2024 09:13 6m 43s master
June 18, 2024 09:13 6m 43s
fix for unassigned
compile and e.coli #554: Commit a30ffc6 pushed by Dmitry-Antipov
June 18, 2024 08:25 7m 0s unassigned_fix
June 18, 2024 08:25 7m 0s
wip
compile and e.coli #553: Commit f2bc6ac pushed by Dmitry-Antipov
June 18, 2024 08:05 6m 50s scaff2
June 18, 2024 08:05 6m 50s
excluding homozygous when counting shifts
compile and e.coli #552: Commit 7e614bd pushed by Dmitry-Antipov
June 17, 2024 14:31 6m 13s scaff2
June 17, 2024 14:31 6m 13s
few fixes for trio breaking script
compile and e.coli #551: Commit d87c735 pushed by skoren
June 14, 2024 21:10 6m 47s master
June 14, 2024 21:10 6m 47s
minor
compile and e.coli #550: Commit db478e6 pushed by Dmitry-Antipov
June 13, 2024 14:43 6m 18s scaff2
June 13, 2024 14:43 6m 18s