update sparsity to match Hi-C parameters

marbl · Jun 25, 2024 · 3538dcc · 3538dcc
1 parent 5cf01b3
commit 3538dcc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/Snakefiles/6-rukki.sm b/src/Snakefiles/6-rukki.sm
@@ -169,7 +169,7 @@ params=""
 params="\$params --init-assign out_init_ann.csv"
 params="\$params --refined-assign out_refined_ann.csv"
 params="\$params --final-assign out_final_ann.csv"
-params="\$params --marker-sparsity 10000"
+params="\$params --marker-sparsity 5000"
 params="\$params --marker-cnt 20"
 params="\$params --issue-sparsity 1000"
 params="\$params --try-fill-bubbles"