This release enables to pass assembled genomes to GABI, as an alternative to raw reads. This will enable users to analyse assemblies from e.g. external sources with the same tool chain as their in-house assembled genomes.
Other changes include:
- Removal of Mash in favour of Sourmash
- Switching to Sourmash for assigning taxonomic information to samples (previous, Kraken was used on raw reads)
- Adding a few on/off switches to allows users to selectively deactivate processing chains.
- Switching to a more comprehensive sourmash database to allow better matches to be found
This release again requires a re-install of the references.