This simulation is an example of how boolean models can be integrated into Paul Macklin's team PhysiCell simulation using PhysiBoSS, in order to integrate more mechanistic details into cell-specific intracellular models.

Run locally :

Download the git folder using git clone and access the src folder :

git clone https://github.com/marcorusc/Invasion_GUI
cd Invasion_GUI/src

compile the project and move the executable into the bin folder :

make
cp myproj ../bin

exit src and run the notebook :

cd ..
jupyter notebook

it could be necessary to export the CACHEDIR, if so :

export CACHEDIR=~/Invasion_GUI/tmpdir

Run in nanoHUB : work in progress

Run in Binder :

Run locally with Docker and Docker-compose

git clone https://github.com/marcorusc/Invasion_GUI
cd Invasion_GUI
docker-compose up -d

And then open your browser to this url : http://localhost:8888/notebooks/Invasion_GUI.ipynb

Run locally with Docker

git clone https://github.com/marcorusc/Invasion_GUI
cd Invasion_GUI
docker build -t invasion_gui .
docker run -p 8888:8888 -d invasion_gui

And then open your browser to this url : http://localhost:8888/notebooks/Invasion_GUI.ipynb