Releases · marschall-lab/GFAffix

New features:

command line interface has changed: refined graph is now written to stdout by default, unless -o option is used
LOG level is now set in command line interface: by default, info log messages are output to stderr, debug log messages can be shown with -v option
Parallel computation support for core algorithm (search & collapse of redundant affixes)
Decollapse of don't-collapse-nodes is completely rewritten and now based only on graph alone (previous version also needed paths), it's now faster and more precise.
gz-compressed GFA files are accepted as input, GFAffix also supports to output refined graph as compressed GFA file
lots of improved checks for correctness of the transformation into the refined graph
dependencies are updated

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