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solve minor conflict in mom_cap.F90 mom_ocean_model_nuopc.F90 and MOM…
…_energetic_PBL.F90, add two new files: src/parameterizations/stochastic/MOM_stochastics.F90 and config_src/external/stochastic_physics/stochastic_physics.F90
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config_src/external/stochastic_physics/stochastic_physics.F90
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| Original file line number | Diff line number | Diff line change |
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| ! The are stubs for ocean stochastic physics | ||
| ! the fully functional code is available at | ||
| ! http://github.com/noaa-psd/stochastic_physics | ||
| module stochastic_physics | ||
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| implicit none | ||
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| private | ||
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| public :: init_stochastic_physics_ocn | ||
| public :: run_stochastic_physics_ocn | ||
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| contains | ||
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| !!!!!!!!!!!!!!!!!!!! | ||
| subroutine init_stochastic_physics_ocn(delt,geoLonT,geoLatT,nx,ny,nz,pert_epbl_in,do_sppt_in, & | ||
| mpiroot, mpicomm, iret) | ||
| implicit none | ||
| real,intent(in) :: delt !< timestep in seconds between calls to run_stochastic_physics_ocn | ||
| integer,intent(in) :: nx !< number of gridpoints in the x-direction of the compute grid | ||
| integer,intent(in) :: ny !< number of gridpoints in the y-direction of the compute grid | ||
| integer,intent(in) :: nz !< number of gridpoints in the z-direction of the compute grid | ||
| real,intent(in) :: geoLonT(nx,ny) !< Longitude in degrees | ||
| real,intent(in) :: geoLatT(nx,ny) !< Latitude in degrees | ||
| logical,intent(in) :: pert_epbl_in !< logical flag, if true generate random pattern for ePBL perturbations | ||
| logical,intent(in) :: do_sppt_in !< logical flag, if true generate random pattern for SPPT perturbations | ||
| integer,intent(in) :: mpiroot !< root processor | ||
| integer,intent(in) :: mpicomm !< mpi communicator | ||
| integer, intent(out) :: iret !< return code | ||
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| iret=0 | ||
| if (pert_epbl_in .EQV. .true. ) then | ||
| print*,'pert_epbl needs to be false if using the stub' | ||
| iret=-1 | ||
| endif | ||
| if (do_sppt_in.EQV. .true. ) then | ||
| print*,'do_sppt needs to be false if using the stub' | ||
| iret=-1 | ||
| endif | ||
| return | ||
| end subroutine init_stochastic_physics_ocn | ||
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| subroutine run_stochastic_physics_ocn(sppt_wts,t_rp1,t_rp2) | ||
| implicit none | ||
| real, intent(inout) :: sppt_wts(:,:) !< array containing random weights for SPPT range [0,2] | ||
| real, intent(inout) :: t_rp1(:,:) !< array containing random weights for ePBL | ||
| !! perturbations (KE generation) range [0,2] | ||
| real, intent(inout) :: t_rp2(:,:) !< array containing random weights for ePBL | ||
| !! perturbations (KE dissipation) range [0,2] | ||
| return | ||
| end subroutine run_stochastic_physics_ocn | ||
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| end module stochastic_physics | ||
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| module get_stochy_pattern_mod | ||
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| private | ||
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| public :: write_stoch_restart_ocn | ||
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| contains | ||
| subroutine write_stoch_restart_ocn(sfile) | ||
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| character(len=*) :: sfile !< name of restart file | ||
| return | ||
| end subroutine write_stoch_restart_ocn | ||
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| end module get_stochy_pattern_mod |
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| !> Top-level module for the MOM6 ocean model in coupled mode. | ||
| module MOM_stochastics | ||
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| ! This file is part of MOM6. See LICENSE.md for the license. | ||
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| ! This is the top level module for the MOM6 ocean model. It contains routines | ||
| ! for initialization, update, and writing restart of stochastic physics. This | ||
| ! particular version wraps all of the calls for MOM6 in the calls that had | ||
| ! been used for MOM4. | ||
| ! | ||
| use MOM_diag_mediator, only : register_diag_field, diag_ctrl, time_type | ||
| use MOM_grid, only : ocean_grid_type | ||
| use MOM_verticalGrid, only : verticalGrid_type | ||
| use MOM_error_handler, only : MOM_error, FATAL, WARNING, is_root_pe | ||
| use MOM_error_handler, only : callTree_enter, callTree_leave | ||
| use MOM_file_parser, only : get_param, log_version, close_param_file, param_file_type | ||
| use mpp_domains_mod, only : domain2d, mpp_get_layout, mpp_get_global_domain | ||
| use mpp_domains_mod, only : mpp_define_domains, mpp_get_compute_domain, mpp_get_data_domain | ||
| use MOM_domains, only : root_PE,num_PEs | ||
| use MOM_coms, only : Get_PElist | ||
| use stochastic_physics, only : init_stochastic_physics_ocn, run_stochastic_physics_ocn | ||
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| #include <MOM_memory.h> | ||
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| implicit none ; private | ||
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| public stochastics_init, update_stochastics | ||
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| !> This control structure holds parameters for the MOM_stochastics module | ||
| type, public:: stochastic_CS | ||
| logical :: do_sppt !< If true, stochastically perturb the diabatic | ||
| logical :: pert_epbl !< If true, then randomly perturb the KE dissipation and genration terms | ||
| integer :: id_sppt_wts = -1 !< Diagnostic id for SPPT | ||
| integer :: id_epbl1_wts=-1 !< Diagnostic id for epbl generation perturbation | ||
| integer :: id_epbl2_wts=-1 !< Diagnostic id for epbl dissipation perturbation | ||
| ! stochastic patterns | ||
| real, allocatable :: sppt_wts(:,:) !< Random pattern for ocean SPPT | ||
| !! tendencies with a number between 0 and 2 | ||
| real, allocatable :: epbl1_wts(:,:) !< Random pattern for K.E. generation | ||
| real, allocatable :: epbl2_wts(:,:) !< Random pattern for K.E. dissipation | ||
| type(diag_ctrl), pointer :: diag !< structure used to regulate timing of diagnostic output | ||
| type(time_type), pointer :: Time !< Pointer to model time (needed for sponges) | ||
| end type stochastic_CS | ||
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| contains | ||
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| !! This subroutine initializes the stochastics physics control structure. | ||
| subroutine stochastics_init(dt, grid, GV, CS, param_file, diag, Time) | ||
| real, intent(in) :: dt !< time step [T ~> s] | ||
| type(ocean_grid_type), intent(in) :: grid !< horizontal grid information | ||
| type(verticalGrid_type), intent(in) :: GV !< vertical grid structure | ||
| type(stochastic_CS), pointer, intent(inout):: CS !< stochastic control structure | ||
| type(param_file_type), intent(in) :: param_file !< A structure to parse for run-time parameters | ||
| type(diag_ctrl), target, intent(inout) :: diag !< structure to regulate diagnostic output | ||
| type(time_type), target :: Time !< model time | ||
| ! Local variables | ||
| integer,allocatable :: pelist(:) ! list of pes for this instance of the ocean | ||
| integer :: mom_comm ! list of pes for this instance of the ocean | ||
| integer :: num_procs ! number of processors to pass to stochastic physics | ||
| integer :: iret ! return code from stochastic physics | ||
| integer :: me ! my pe | ||
| integer :: pe_zero ! root pe | ||
| integer :: nx ! number of x-points including halo | ||
| integer :: ny ! number of x-points including halo | ||
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| ! This include declares and sets the variable "version". | ||
| #include "version_variable.h" | ||
| character(len=40) :: mdl = "ocean_stochastics_init" ! This module's name. | ||
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| call callTree_enter("ocean_model_stochastic_init(), MOM_stochastics.F90") | ||
| if (associated(CS)) then | ||
| call MOM_error(WARNING, "MOM_stochastics_init called with an "// & | ||
| "associated control structure.") | ||
| return | ||
| else ; allocate(CS) ; endif | ||
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| CS%diag => diag | ||
| CS%Time => Time | ||
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| ! Read all relevant parameters and write them to the model log. | ||
| call log_version(param_file, mdl, version, "") | ||
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| ! get number of processors and PE list for stocasthci physics initialization | ||
| call get_param(param_file, mdl, "DO_SPPT", CS%do_sppt, & | ||
| "If true, then stochastically perturb the thermodynamic "//& | ||
| "tendemcies of T,S, amd h. Amplitude and correlations are "//& | ||
| "controlled by the nam_stoch namelist in the UFS model only.", & | ||
| default=.false.) | ||
| call get_param(param_file, mdl, "PERT_EPBL", CS%pert_epbl, & | ||
| "If true, then stochastically perturb the kinetic energy "//& | ||
| "production and dissipation terms. Amplitude and correlations are "//& | ||
| "controlled by the nam_stoch namelist in the UFS model only.", & | ||
| default=.false.) | ||
| if (CS%do_sppt .OR. CS%pert_epbl) then | ||
| num_procs=num_PEs() | ||
| allocate(pelist(num_procs)) | ||
| call Get_PElist(pelist,commID = mom_comm) | ||
| pe_zero=root_PE() | ||
| nx = grid%ied - grid%isd + 1 | ||
| ny = grid%jed - grid%jsd + 1 | ||
| call init_stochastic_physics_ocn(dt,grid%geoLonT,grid%geoLatT,nx,ny,GV%ke, & | ||
| CS%pert_epbl,CS%do_sppt,pe_zero,mom_comm,iret) | ||
| if (iret/=0) then | ||
| call MOM_error(FATAL, "call to init_stochastic_physics_ocn failed") | ||
| return | ||
| endif | ||
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| if (CS%do_sppt) allocate(CS%sppt_wts(grid%isd:grid%ied,grid%jsd:grid%jed)) | ||
| if (CS%pert_epbl) then | ||
| allocate(CS%epbl1_wts(grid%isd:grid%ied,grid%jsd:grid%jed)) | ||
| allocate(CS%epbl2_wts(grid%isd:grid%ied,grid%jsd:grid%jed)) | ||
| endif | ||
| endif | ||
| CS%id_sppt_wts = register_diag_field('ocean_model', 'sppt_pattern', CS%diag%axesT1, Time, & | ||
| 'random pattern for sppt', 'None') | ||
| CS%id_epbl1_wts = register_diag_field('ocean_model', 'epbl1_wts', CS%diag%axesT1, Time, & | ||
| 'random pattern for KE generation', 'None') | ||
| CS%id_epbl2_wts = register_diag_field('ocean_model', 'epbl2_wts', CS%diag%axesT1, Time, & | ||
| 'random pattern for KE dissipation', 'None') | ||
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| if (is_root_pe()) & | ||
| write(*,'(/12x,a/)') '=== COMPLETED MOM STOCHASTIC INITIALIZATION =====' | ||
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| call callTree_leave("ocean_model_init(") | ||
| return | ||
| end subroutine stochastics_init | ||
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| !> update_ocean_model uses the forcing in Ice_ocean_boundary to advance the | ||
| !! ocean model's state from the input value of Ocean_state (which must be for | ||
| !! time time_start_update) for a time interval of Ocean_coupling_time_step, | ||
| !! returning the publicly visible ocean surface properties in Ocean_sfc and | ||
| !! storing the new ocean properties in Ocean_state. | ||
| subroutine update_stochastics(CS) | ||
| type(stochastic_CS), intent(inout) :: CS !< diabatic control structure | ||
| call callTree_enter("update_stochastics(), MOM_stochastics.F90") | ||
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| ! update stochastic physics patterns before running next time-step | ||
| call run_stochastic_physics_ocn(CS%sppt_wts,CS%epbl1_wts,CS%epbl2_wts) | ||
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| return | ||
| end subroutine update_stochastics | ||
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| end module MOM_stochastics | ||
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