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make sqlalchemy select fields with marshmallow schemas

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marshmallow-select

marshmallow 2/3 compatible

Use marshmallow schemas to generate select clauses for sqlalchemy queries.

Installation

pip install marshmallow-select. Or see the guide to pip installing from github repos.

Usage

from marshmallow_select import SchemaFilter

from schemas import UserSchema
from models import User

qry = User.some_query_method()


class ShortUserSchema(UserSchema):
    class Meta:
        fields = ['id', 'name']


# fetches only name and id
sf = SchemaFilter(ShortUserSchema())
short_qry = sf(qry)

# fetches everything, but in one single joined query, even if
# fields of User (or fields of fields of user) are lazily-loaded
sf = SchemaFilter(UserSchema(), unlazify=True)
joined_qry = sf(qry)

You can also filter nested fields

from marshmallow_select import SchemaFilter

from schemas import UserSchema, OrganizationSchema
from models import User

qry = User.some_query_method()


class ShortOrganizationSchema(OrganizationSchema):
    class Meta:
        fields = ['id', 'name']


class UserWithShortOrgSchema(UserSchema):
    organization = Nested(ShortOrganizationSchema)


# Will join-load the user's org, but only fetch id & name
sf = SchemaFilter(UserWithShortOrgSchema())
new_qry = sf(qry)

I have also written a blog post about using the package

Tips

Schema fields which do not map to model fields

marshmallow-select makes reasonable efforts to detect fields that are not directly on the schema. For example, if you have a model with a field approved and a schema like

class FooSchema(Schema):
    is_approved = Boolean(attribute="approved")

marshmallow-select will include approved in the list of fields it will fetch. Nonetheless, there is nothing realistic it can do about the following case

class User(BaseModel):
    first_name = Column(String(100))
    last_name  = Column(String(100))

    @property
    def full_name(self):
        return ' '.join([self.first_name, self.last_name])


class UserSchema(Schema):
    full_name = String()

The solution in this case (aside from telling you to do less of that; we all have legacy code) is to explicitly bring these fields to the attention of marshmallow-select without actually adding them to the list of output fields

class UserSchema(Schema):
    full_name = String()
    first_name = Field(load_only=True)
    last_name = Field(load_only=True)

since marshmallow-select treats any fields on the schema as fields that should be fetched, even if the schema declares that they will not actually be serialized (if your existing schema has load_only fields you want marshmallow-select to not fetch, you should exclude them).

Separately-added values

Sometimes when trying to integrate schemas into legacy code, you end up with particular fields which are added separately from normal serialization-via-schema. In other words something like:

# used by api resource A
def fetch_foos():
    foos = read_foos_from_db()
    return {'foos_list': [FooSchema().dump(foo) for foo in foos]}


# used by api resource B
def fetch_foos_special_case():
    foos = read_foos_from_db()
    dumped_foos = [FooSchema().dump(foo) for foo in foos]
    for foo in dumped_foos:
        foo['special_case_field'] = get_special_value()
    return {'special_foos_list': dumped_foos}

Perhaps in addition to using schemas for serialization, you also wish to use them to generate swagger/apispec markup. In this situation, marshmallow-select is perfectly happy with you doing something like:

class SpecialFooSchema(FooSchema):
    # or whatever type get_special_value returns.
    special_case_field = Integer()


# This schema could be used both to serialize both cases of Foo
# objects, and to filter queries for them.
class DualPurposeSpecialFooSchema(FooSchema):
    special_case_field = Integer(missing=None)

In other words, the marshmallow-select does not care if a field cannot be found. Filtering via either of the above schema when querying for Foo objects should be equivalent to querying with the parent schema.

Notes

This code is semantically versioned. Just because it says "1.0.0" doesn't mean it's even vaguely production-ready. The fact that I'm using it in production doesn't mean you should.

TODO

  1. Performance improvements: I never really bothered to cache some of the more expensive introspections. It runs on order of tens of milliseconds, but can push up to hundreds (when in fact it should probably be on the order of microseconds). This is fine when you're optimizing a query that should be immediate but is taking minutes because of k*n+1 query bugs, but can sometimes mean the difference between whether you can get a query down to sub-second or not.

    It should also be possible to perform the necessary introspections at application boot time, instead of query execution time. This is in-principle possible, although would require losing some flexibility.

  2. Some simple way of detecting & reporting if the schema "covers" the query (i.e. serializing with the schema will not produce additional queries). Currently I just turn on sqlalchemy engine echoing and run the query and the serialization in the console and see if any extra queries happen.

  3. Support for multi-entity queries (e.g. explicit joins of 2 models without existing relationships). This rarely comes up for us (most of our queries which involve explicit joins are aggregations), but might be useful to someone.

  4. Would be nice to have some kind of metaclass mixin so that instead of declaring dependent fields (like first_name) load_only, they could just be listed in the metaclass in a tuple called dependent_fields or something.

Acknowledgements

Originally written on behalf of Distribute

distribute logo

You should totally check them out if you're in the wholesale purchasing|distribution space.

LICENSE

marshmallow-select is distributed under the terms of the WTFPL, version 2. See COPYING.

WARRANTY

Users who believe that it's my fault if something that goes wrong with their software as a result of using this code should consult the case of Arkell v. Pressdram.

See Also

My blog post announcing the package.

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