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Data type expand #388

Merged
merged 11 commits into from
Jul 15, 2024
Merged

Data type expand #388

merged 11 commits into from
Jul 15, 2024

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hmlli
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@hmlli hmlli commented Apr 22, 2024

inheriting from #348. Closed #348 to avoid spamming inboxes, but linting should pass now.

Major changes:

  • Enhanced the data input flexibility in the migration graph tool, now accepting multiple data types including lists, strings, integers, and floats.

  • Added a new test case to ensure the migration graph tool accurately processes single key-value pairs.

Summary by CodeRabbit

  • New Features

    • Enhanced add_edge_data_from_sc function to accept list, str, or float types for the data_array parameter.
  • Bug Fixes

    • Added conditional checks to handle different types of data_array appropriately in the MigrationGraph.
  • Tests

    • Introduced new test cases for add_edge_data_from_sc to verify functionality with varied data types and specific scenarios.

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coderabbitai bot commented Apr 22, 2024

Walkthrough

The recent update in pymatgen's add_edge_data_from_sc function within edge_data_from_sc.py now allows the data_array parameter to accept lists, strings, and floats. Additionally, conditional logic has been introduced to handle these different data types when adding data to similar edges in the MigrationGraph. Corresponding tests have been added to ensure the function works correctly with these new data types.

Changes

File(s) Change Summary
pymatgen/analysis/diffusion/utils/edge_data_from_sc.py Updated add_edge_data_from_sc to accept list, str, and float for data_array and added conditional checks for handling them.
pymatgen/analysis/diffusion/utils/tests/test_edge_data_from_sc.py Added new test cases to verify the functionality of add_edge_data_from_sc with different data types.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant MigrationGraph
    participant EdgeDataModule as edge_data_from_sc.py
    
    User->>EdgeDataModule: call add_edge_data_from_sc(data_array)
    EdgeDataModule->>EdgeDataModule: Check type of data_array
    alt data_array is list
        EdgeDataModule->>MigrationGraph: Add list data
    else data_array is str
        EdgeDataModule->>MigrationGraph: Add string data
    else data_array is float
        EdgeDataModule->>MigrationGraph: Add float data
    end
    MigrationGraph->>User: Return result
Loading

Assessment against linked issues

Objective Addressed Explanation
Enhance data input flexibility (issue #348)
Tests for accurate processing of single key-value pairs

Poem

In the realm of data wide and vast,
Lists, strings, and floats now join the cast.
Edges weave their tales anew,
MigrationGraph's horizons grew.
With every test, a code delight,
Progress shines, coding's light. ✨🐇


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Actionable comments posted: 1

Comment on lines 56 to 62
add_edge_data_from_sc(
mg_Li,
i_sc=input_struct_i,
e_sc=input_struct_e,
data_array=test_single_key,
key=test_single,
)
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The parameters data_array and key appear to be swapped in the function call.

-        data_array=test_single_key,
-        key=test_single,
+        data_array=test_single,
+        key=test_single_key,

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
add_edge_data_from_sc(
mg_Li,
i_sc=input_struct_i,
e_sc=input_struct_e,
data_array=test_single_key,
key=test_single,
)
add_edge_data_from_sc(
mg_Li,
i_sc=input_struct_i,
e_sc=input_struct_e,
data_array=test_single,
key=test_single_key,
)

@hmlli
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hmlli commented Apr 22, 2024

@shyuep My most sincere apologies for the delay. The PR should now be ready to merge, please take a look when you have chance. Thanks in advance!

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Actionable comments posted: 0

Outside diff range, codebase verification and nitpick comments (1)
pymatgen/analysis/diffusion/utils/edge_data_from_sc.py (1)

59-62: Conditional check for data types.

The conditional check correctly handles the different data types for data_array. However, consider adding a type hint for better readability.

-  if isinstance(data_array, list):
+  if isinstance(data_array, list | str | float):
Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 71c0a06 and b082355.

Files selected for processing (2)
  • pymatgen/analysis/diffusion/utils/edge_data_from_sc.py (2 hunks)
  • pymatgen/analysis/diffusion/utils/tests/test_edge_data_from_sc.py (1 hunks)
Files skipped from review due to trivial changes (1)
  • pymatgen/analysis/diffusion/utils/tests/test_edge_data_from_sc.py
Additional comments not posted (1)
pymatgen/analysis/diffusion/utils/edge_data_from_sc.py (1)

31-31: Enhanced data input flexibility.

The data_array parameter now accepts a list, string, or float, increasing the flexibility of the function.

@shyuep shyuep merged commit ae07ac2 into materialsvirtuallab:master Jul 15, 2024
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@shyuep
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shyuep commented Jul 15, 2024

Thanks.

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2 participants