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@matsengrp

Matsen Group

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  1. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 17 2

  2. sumrep sumrep Public

    Summary statistics for repertoires

    R 16 6

  3. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 16 4

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 15 4

  5. phippery phippery Public

    Python 14 2

  6. gapml gapml Public

    Python 11 4

Repositories

Showing 10 of 110 repositories
  • SARS2-synonymous-mut-rate Public

    Using mutation counts from UShER to estimate SARS-CoV-2's mutation rate

    matsengrp/SARS2-synonymous-mut-rate’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 7, 2025
  • netam Public

    Neural networks to model BCR affinity maturation

    matsengrp/netam’s past year of commit activity
    Python 1 0 6 0 Updated Jan 2, 2025
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 14 2 Updated Jan 2, 2025
  • thrifty-experiments-1 Public
    matsengrp/thrifty-experiments-1’s past year of commit activity
    Jupyter Notebook 1 0 1 1 Updated Dec 18, 2024
  • multidms Public

    Joint modeling of multiple deep mutational scanning experiments

    matsengrp/multidms’s past year of commit activity
    Jupyter Notebook 1 MIT 0 20 2 Updated Dec 2, 2024
  • dnsm-json-database Public
    matsengrp/dnsm-json-database’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2024
  • thrifty-models Public
    matsengrp/thrifty-models’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 13, 2024
  • phip-flow Public

    A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

    matsengrp/phip-flow’s past year of commit activity
    Python 11 MIT 6 0 0 Updated Nov 7, 2024
  • phippery Public
    matsengrp/phippery’s past year of commit activity
    Python 14 MIT 2 0 0 Updated Nov 7, 2024
  • usher Public Forked from yatisht/usher

    Ultrafast Sample Placement on Existing Trees

    matsengrp/usher’s past year of commit activity
    C++ 0 MIT 42 1 0 Updated Oct 24, 2024
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