V1.04

V1.04 (#51)

* updated V4 to latest phippery

* updated docker container and specified the phippery version

* fix enrichment workflow bug

* cleanup

* renamed tile length param

V1.03

V1.03 (#48)

* added neg binom fit

* fitting

* update according to kevin's comments

* add warning about beads

* added zscore to optional workflow

* added zscore bin script

* Update phip-flow Docker image

* Update phip-flow docker image

* Remove unused import

* Add VirScan code (#49)

* WIP - script used to aggregate results by organism

* Add organism aggregation to workflow

* Isolate aggregation in separate module

Shard aggregation by sample

* Fix shell pattern for variable interpolation

* Flatten the list of tuples appropriately

* Template for running phip-flow

* Infer the peptide length from the sequence

Remove global variable
Suggestion from @chananap

* Users cannot specify their own `sample_id` column

* Drop the zscores from the peptide EBS table

Thanks to @chananap for finding this

Co-authored-by: Sam Minot <sminot@fredhutch.org>

V1.01

V1.01 (#46)

* Bowtie download & new FH base image
Co-authored-by: Sam Minot <sminot@fredhutch.org>