Off-label modification detection in ONT dRNA-seq

End-to-end simulation of nanopore sequencing signals with feed-forward transformers

Code for paper: "Direct high-throughput deconvolution of unnatural bases via nanopore sequencing and bootstrapped learning"

Biological foundation modeling from molecular to genome scale

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

Xenomorph v1.2

A bioinformatics tool for working with modified bases

a tool for simulating nanopore raw signal data

Visualise and analyse nanopore (ONT) raw signals

Nanopore sequence read simulator

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

A curated list of awesome nanopore analysis tools.

A Python Library for Outlier and Anomaly Detection, Integrating Classical and Deep Learning Techniques

List of tools & datasets for anomaly detection on time-series data.

ruptures: change point detection in Python

A simple toolkit for manipulating nanopore signal data

Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.

a long read simulator that can imitate many types of read problems

A python script to encode/decode arbitrary computer files into DNA sequences.

INC-Seq: Accurate single molecule reads using nanopore sequencing

Oxford Nanopore's Basecaller

immigrant microbiome project related analyses

Python bindings for the parasail C library.

Nanopore basecalling and consensus decoding

The machine learning toolkit for time series analysis in Python

Fight Recognition from Still Images in the Wild @ WACVW2022, Real-world Surveillance Workshop

SemiBin: metagenomics binning with self-supervised deep learning

A versatile pairwise aligner for genomic and spliced nucleotide sequences