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@rust-bio @iqbal-lab-org @Snakemake-Profiles @snakemake @Mykrobe-tools

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  1. rasusa rasusa Public

    Randomly subsample sequencing reads or alignments

    Rust 204 17

  2. snakemake/snakefmt snakemake/snakefmt Public

    The uncompromising Snakemake code formatter

    Python 147 28

  3. ssubmit ssubmit Public

    Submit slurm sbatch jobs without a script

    Rust 62 5

  4. compression_benchmark compression_benchmark Public

    Benchmarking FASTQ compression with 'mature' compression algorithms

    Python 30 4

  5. nohuman nohuman Public

    Remove human reads from a sequencing run

    Rust 22 3

  6. ontime ontime Public

    Extract subsets of ONT (Nanopore) reads based on time

    Rust 19 1