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1. ComplexityByStartPosition ComplexityByStartPosition Public

   Creates a rarefaction curve to measure complexity in RNA Seq data using start position

   C++ 13 3

2. Scotty Scotty Public

   The back end files for the Scotty app. Check ReadMe for version issues.

   MATLAB 11 1

3. Process-Genes-In-A-Bam-File Process-Genes-In-A-Bam-File Public

   This is the custom script that was used to calculate FPKM in Smanski et al. 2014

   C++ 1

4. AddUMIsToBam AddUMIsToBam Public

   Adds UMIs To Bam

   C++ 1

5. Presentation Presentation Public

   Presentations on RNA Seq Power Analysis and Chip Seq

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6. GetRandomAlignmentsByRead GetRandomAlignmentsByRead Public

   Processes a bam file to get all of the alignments for a random set of reads.

   C++