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Merge pull request #228 from mcwdsi/release-2024-01-09
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Preparing release 2024-01-10.
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@dillerm
dillerm authored Jan 10, 2024
2 parents 1ef4773 + 960ed85 commit b3fab23
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88 changes: 26 additions & 62 deletions omrse-base.json
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}, {
"pred" : "http://purl.org/dc/elements/1.1/description",
"val" : "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations."
}, {
"pred" : "http://purl.org/dc/elements/1.1/title",
"val" : "Ontology for Modeling and Representation of Social Entities"
}, {
"pred" : "http://purl.org/dc/elements/1.1/type",
"val" : "http://purl.obolibrary.org/obo/IAO_8000001"
Expand All @@ -65,14 +68,11 @@
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#comment",
"val" : "This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#label",
"val" : "Ontology for Modeling and Representation of Social Entities"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-10-08"
"val" : "2024-01-10"
} ],
"version" : "http://purl.obolibrary.org/obo/omrse/releases/2023-10-08/omrse-base.json"
"version" : "http://purl.obolibrary.org/obo/omrse/releases/2024-01-10/omrse-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/IAO_0000115",
Expand Down Expand Up @@ -194,7 +194,7 @@
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. "
"val" : "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
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"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/OMRSE_00000168",
"lbl" : "questions asking process",
"lbl" : "obsolete questions asking process",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
Expand All @@ -2072,7 +2072,7 @@
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/OMRSE_00000173",
"lbl" : "material information bearer of question text plus answer set",
"lbl" : "obsolete material information bearer of question text plus answer set",
"type" : "CLASS",
"meta" : {
"deprecated" : true
Expand All @@ -2087,14 +2087,14 @@
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/OMRSE_00000176",
"lbl" : "identity question asking process",
"lbl" : "obsolete identity question asking process",
"type" : "CLASS",
"meta" : {
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/OMRSE_00000177",
"lbl" : "ethnic identity question asking process",
"lbl" : "obsolete ethnic identity question asking process",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
Expand All @@ -2105,7 +2105,7 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/OMRSE_00000178",
"lbl" : "race identity question asking process",
"lbl" : "obsolete race identity question asking process",
"type" : "CLASS",
"meta" : {
"basicPropertyValues" : [ {
Expand Down Expand Up @@ -5789,6 +5789,14 @@
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000097",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/BFO_0000038"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000098",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMRSE_00000132"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000100",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMRSE_00000132"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000102",
"pred" : "is_a",
Expand Down Expand Up @@ -6013,6 +6021,10 @@
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000132",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMRSE_00000179"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000133",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMRSE_00000132"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000134",
"pred" : "is_a",
Expand Down Expand Up @@ -6185,14 +6197,6 @@
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000168",
"pred" : "is_a",
"obj" : "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000168",
"pred" : "http://purl.obolibrary.org/obo/RO_0000057",
"obj" : "http://purl.obolibrary.org/obo/NCBITaxon_9606"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000168",
"pred" : "http://purl.obolibrary.org/obo/RO_0000057",
"obj" : "http://purl.obolibrary.org/obo/OMRSE_00000173"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000169",
"pred" : "is_a",
Expand Down Expand Up @@ -6472,15 +6476,15 @@
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000230",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMIABIS_0001025"
"obj" : "http://purl.obolibrary.org/obo/OBIB_0000701"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000231",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMIABIS_0001035"
"obj" : "http://purl.obolibrary.org/obo/OBIB_0000710"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000232",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/OMIABIS_0000060"
"obj" : "http://purl.obolibrary.org/obo/OBIB_0000667"
}, {
"sub" : "http://purl.obolibrary.org/obo/OMRSE_00000233",
"pred" : "is_a",
Expand Down Expand Up @@ -7005,46 +7009,6 @@
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000067",
"genusIds" : [ "http://purl.obolibrary.org/obo/OMRSE_00000011" ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000098",
"genusIds" : [ "http://purl.obolibrary.org/obo/OMRSE_00000132" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/IAO_0020022"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/IAO_0000136",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_9606"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000100",
"genusIds" : [ "http://purl.obolibrary.org/obo/OMRSE_00000132" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/IAO_0020022"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/IAO_0000136",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_9606"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000132",
"genusIds" : [ "http://purl.obolibrary.org/obo/IAO_0000030" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/IAO_0020022"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/IAO_0000136",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_9606"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000133",
"genusIds" : [ "http://purl.obolibrary.org/obo/OMRSE_00000132" ],
"restrictions" : [ {
"propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050",
"fillerId" : "http://purl.obolibrary.org/obo/IAO_0020022"
}, {
"propertyId" : "http://purl.obolibrary.org/obo/IAO_0000136",
"fillerId" : "http://purl.obolibrary.org/obo/NCBITaxon_9606"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/OMRSE_00000142",
"genusIds" : [ "http://purl.obolibrary.org/obo/IAO_0000030" ],
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37 changes: 19 additions & 18 deletions omrse-base.obo
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: omrse/releases/2023-10-08/omrse-base.owl
data-version: omrse/releases/2024-01-10/omrse-base.owl
remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt
ontology: omrse/omrse-base
property_value: http://purl.org/dc/elements/1.1/contributor "Barry Smith" xsd:string
Expand All @@ -20,10 +20,10 @@ property_value: http://purl.org/dc/elements/1.1/creator "Shariq Tariq" xsd:strin
property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:string
property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string
property_value: http://purl.org/dc/elements/1.1/description "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "Ontology for Modeling and Representation of Social Entities" xsd:string
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string
property_value: owl:versionInfo "2023-10-08" xsd:string
name: Ontology for Modeling and Representation of Social Entities
property_value: owl:versionInfo "2024-01-10" xsd:string

[Term]
id: GO:0003674
Expand Down Expand Up @@ -107,7 +107,7 @@ property_value: IAO:0000118 "female gender" xsd:string
[Term]
id: OMRSE:00000010
name: human health care role
def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. " []
def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis." []
is_a: OMRSE:00002072 ! role in human social processes
relationship: BFO:0000054 OGMS:0000097
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
Expand Down Expand Up @@ -774,6 +774,7 @@ is_a: BFO:0000038
id: OMRSE:00000098
name: obsolete racial identity datum
def: "A racial identity is an information content entity that is the output of some racial identitification process and is intended to be a truthful statement about the genetic or cultural race of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method." []
is_a: OMRSE:00000132 ! obsolete identity datum
is_obsolete: true
replaced_by: racial identity information content entity

Expand All @@ -785,6 +786,7 @@ name: racial identification process
id: OMRSE:00000100
name: obsolete ethnic identity datum
def: "An ethnic identity datum is an information content entity that is the output of some ethnic identitification process and is intended to be a truthful statement about the cultural or national heritage of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method." []
is_a: OMRSE:00000132 ! obsolete identity datum
property_value: IAO:0000117 "Amanda Hicks" xsd:string
is_obsolete: true
replaced_by: ethnic identity information content entity
Expand Down Expand Up @@ -1032,6 +1034,7 @@ replaced_by: social identity information content entity
id: OMRSE:00000133
name: obsolete gender identity datum
def: "A gender identity is an information content entity that is the output of some gender identitification process and is intended to be a truthful statement about a person's subjective sense of their gender. Unlike data items they are not necessilary contributed or acquired by a reliable method." []
is_a: OMRSE:00000132 ! obsolete identity datum
property_value: http://purl.org/dc/elements/1.1/creator "Amanda Hicks" xsd:string
is_obsolete: true
replaced_by: gender identity information content entity
Expand Down Expand Up @@ -1227,7 +1230,7 @@ id: OMRSE:00000163
name: response to a question asking process
comment: Note that not all responses to a question asking process are answers. For example, a refusal to answer is not an answer. A refusal to answer is also not a specified output of the question asking process since it does not acheive the objective of asking the question, which is to get an answer.
is_a: IAO:0000030
relationship: RO:0000056 OMRSE:00000168 ! questions asking process
relationship: RO:0000056 OMRSE:00000168 ! obsolete questions asking process

[Term]
id: OMRSE:00000164
Expand All @@ -1251,10 +1254,8 @@ relationship: BFO:0000066 OMRSE:00000074 ! housing unit

[Term]
id: OMRSE:00000168
name: questions asking process
name: obsolete questions asking process
is_a: ObsoleteClass
relationship: RO:0000057 NCBITaxon:9606
relationship: RO:0000057 OMRSE:00000173 ! material information bearer of question text plus answer set
is_obsolete: true
replaced_by: http://purl.obolibrary.org/obo/OMRSE_00000198

Expand Down Expand Up @@ -1286,7 +1287,7 @@ intersection_of: BFO:0000054 OGMS:0000097

[Term]
id: OMRSE:00000173
name: material information bearer of question text plus answer set
name: obsolete material information bearer of question text plus answer set
is_a: BFO:0000040
is_obsolete: true

Expand All @@ -1302,21 +1303,21 @@ is_a: OMRSE:00000163 ! response to a question asking process

[Term]
id: OMRSE:00000176
name: identity question asking process
is_a: OMRSE:00000168 ! questions asking process
name: obsolete identity question asking process
is_a: OMRSE:00000168 ! obsolete questions asking process
is_obsolete: true

[Term]
id: OMRSE:00000177
name: ethnic identity question asking process
is_a: OMRSE:00000176 ! identity question asking process
name: obsolete ethnic identity question asking process
is_a: OMRSE:00000176 ! obsolete identity question asking process
is_obsolete: true
replaced_by: http://purl.obolibrary.org/obo/OMRSE_00000199

[Term]
id: OMRSE:00000178
name: race identity question asking process
is_a: OMRSE:00000176 ! identity question asking process
name: obsolete race identity question asking process
is_a: OMRSE:00000176 ! obsolete identity question asking process
is_obsolete: true
replaced_by: http://purl.obolibrary.org/obo/OMRSE_00000200

Expand Down Expand Up @@ -1849,7 +1850,7 @@ property_value: IAO:0000117 "S. Clint Dowland" xsd:string
id: OMRSE:00000230
name: county smoking survey plan specification
def: "A survey plan specification that aims to collect information about the smoking behavior or lack thereof of a population on a county level. Concretization of a smoking survey plan that is stratified by county." []
is_a: OMIABIS:0001025
is_a: OBIB:0000701
property_value: http://purl.org/dc/elements/1.1/contributor "Hansi Zhang" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Jiang Bian" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string
Expand All @@ -1863,7 +1864,7 @@ property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
id: OMRSE:00000231
name: county smoking survey execution
def: "A survey execution that realizes the concretization of a smoking survey plan specification that is stratified by county." []
is_a: OMIABIS:0001035
is_a: OBIB:0000710
property_value: http://purl.org/dc/elements/1.1/contributor "Hansi Zhang" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Jiang Bian" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string
Expand All @@ -1877,7 +1878,7 @@ property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
id: OMRSE:00000232
name: county smoking survey data
def: "Survey data that is the specified output of a county smoking survey execution." []
is_a: OMIABIS:0000060
is_a: OBIB:0000667
property_value: http://purl.org/dc/elements/1.1/contributor "Hansi Zhang" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Jiang Bian" xsd:string
property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string
Expand Down
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