changed output shape

changed initialization

recOrder/cli/apply_inverse_transfer_function.py

@@ -144,26 +144,29 @@ def apply_inverse_transfer_function_cli(
  output_z_shape = input_dataset.data.shape[2]
 
  output_shape = (
- t_shape,
+ input_dataset.data.shape[0],
  len(channel_names),
  output_z_shape,
  ) + input_dataset.data.shape[3:]
 
  # Create output dataset
  output_dataset = open_ome_zarr(
- output_path, layout="fov", mode="w", channel_names=channel_names
+ output_path, layout="fov", mode="a", channel_names=channel_names
  )
- output_array = output_dataset.create_zeros(
- name="0",
- shape=output_shape,
- dtype=np.float32,
- chunks=(
- 1,
- 1,
- 1,
+ if 0 in time_indices:
+ output_array = output_dataset.create_zeros(
+ name="0",
+ shape=output_shape,
+ dtype=np.float32,
+ chunks=(
+ 1,
+ 1,
+ 1,
+ )
+ + input_dataset.data.shape[3:], # chunk by YX
  )
-  + input_dataset.data.shape[3:], # chunk by YX
- )
+ else:
+  output_array = output_dataset[0]
 
  # Load data
  tczyx_uint16_numpy = input_dataset.data.oindex[:, channel_indices]