Remove microscope parameters from calibration metadata

[ziw-liu]

Resolves #224.

[deprecated-napari-hub-preview-bot]

Preview page for your plugin is ready here:
https://preview.napari-hub.org/mehta-lab/recOrder/227
Updated: 2022-10-05T21:51:01.024960

[ziw-liu]

One thing to notice is that these lines used to automatically update the fields in the Acq/Rec tab after loading a calibration:

recOrder/recOrder/plugin/widget/main_widget.py

Lines 2162 to 2169 in f7946b9

	# Update the Microscope Parameters with those from the previous calibration (if they're present)
	params = metadata.Microscope_parameters
	if params is not None:
	self.ui.le_n_media.setText(str(params['n_objective_media']) if params['n_objective_media'] is not None else '')
	self.ui.le_obj_na.setText(str(params['objective_NA']) if params['objective_NA'] is not None else '')
	self.ui.le_cond_na.setText(str(params['condenser_NA']) if params['condenser_NA'] is not None else '')
	self.ui.le_mag.setText(str(params['magnification']) if params['magnification'] is not None else '')
	self.ui.le_ps.setText(str(params['pixel_size']) if params['pixel_size'] is not None else '')

Any workflow relying on this behavior will be affected.

[talonchandler]

Thanks Ziwen...this is perfect.

I tested:

• run calibration
• load calibration (with and without microscope params in the calibration file)
• offline mode QLIPP reconstruction (with and without microscope params in the calibration file)
  and all worked as expected.

Thanks for flagging the fact that the parameters will no longer be populated during "Load Calibration". I think the new behavior is correct.