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Vini2 committed Sep 26, 2024
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38 changes: 2 additions & 36 deletions DEMO.md
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# GraphBin-Tk Demo

## Setup GraphBin-Tk
## Installing GraphBin-Tk

First, let's download GraphBin-Tk. Make sure you have `git` installed.

```shell
git clone https://github.com/metagentools/gbintk.git
```

Now move in to the 'gbintk' directory.

```shell
cd gbintk
```

Let's create an environment for gbintk using the provided `environment.yml` file. Make sure you have `conda`` installed.

```shell
conda env create -f environment.yml
```

Activate the environment.

```shell
conda activate gbintk
```

Install using `flit`

```shell
flit install
```

Test your installation.

```shell
gbintk --help
```
Please follow the instructions provided in the [README](https://github.com/metagentools/gbintk/blob/main/README.md) to install `gbintk`.

Now we are all set for the demo.

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evaluate Evaluate the binning results given a ground truth
```

Please refer to [DEMO.md](https://github.com/metagentools/gbintk/blob/main/DEMO.md) for example code to run using test data provided. For further details on available subcommands and examples, please refer to the documentation hosted at **[Read the Docs](https://gbintk.readthedocs.io/en/latest/)**.

## Citation

If you use GraphBin-Tk in your work, please cite the relevant tools.
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