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DOC: Update README
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Vini2 committed Apr 16, 2024
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[![CodeQL](https://github.com/metagentools/gbintk/actions/workflows/codeql.yml/badge.svg)](https://github.com/metagentools/gbintk/actions/workflows/codeql.yml)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

GraphBin-Tk combines assembly graph-based metagenomic bin-refinement and binning techniques GraphBin, GraphBin2 and
MetaCoAG into one comprehensive toolkit.
GraphBin-Tk combines assembly graph-based metagenomic bin-refinement and binning techniques [GraphBin](https://github.com/metagentools/GraphBin), [GraphBin2](https://github.com/metagentools/GraphBin2) and [MetaCoAG](https://github.com/metagentools/MetaCoAG) into one comprehensive toolkit.

## Available commands

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metacoag MetaCoAG: Binning Metagenomic Contigs via Composition,...
```

### `gbintk graphbin`: Run GraphBin
### `gbintk graphbin`: Run [GraphBin](https://github.com/metagentools/GraphBin)

Run `gbintk graphbin --help` to list the help message for GraphBin.

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--help Show this message and exit.
```

### `gbintk graphbin2`: Run GraphBin2
### `gbintk graphbin2`: Run [GraphBin2](https://github.com/metagentools/GraphBin2)

Run `gbintk graphbin2 --help` to list the help message for GraphBin2.

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--help Show this message and exit.
```

### `gbintk metacoag`: Run MetaCoAG
### `gbintk metacoag`: Run [MetaCoAG](https://github.com/metagentools/MetaCoAG)

Run `gbintk metacoag --help` to list the help message for MetaCoAG.

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