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There are matching MP-HPO terms where only the HPO term has an EQ, but the MP term of the pair does not have any.
See uPheno issue: obophenotype/upheno#898 (comment) .
I have created the table below with 37 of these pairs.
After your review, I can add these EQs to the appropriate MP terms in one go.
There are two patterns used for these in HPO:
abnormalMorphologyOfAnatomicalEntity
abnormalMorphologyOfPartOfAnatomicalEntity
pattern
HP EQ
MP ID
MP LABEL
HP ID
HP LABEL
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'arch of aorta') and ('has modifier' some abnormal))
MP:0004113
abnormal aortic arch morphology
HP:0012303
Abnormal aortic arch morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'cortex of kidney') and ('has modifier' some abnormal))
MP:0000521
abnormal kidney cortex morphology
HP:0011035
Abnormal renal cortex morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'fused sacrum') and ('has modifier' some abnormal))
MP:0010113
abnormal sacrum morphology
HP:0005107
Abnormal sacrum morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'heart left ventricle') and ('has modifier' some abnormal))
MP:0003921
abnormal heart left ventricle morphology
HP:0001711
Abnormal left ventricle morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'heart right ventricle') and ('has modifier' some abnormal))
MP:0003920
abnormal heart right ventricle morphology
HP:0001707
Abnormal right ventricle morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'interatrial septum') and ('has modifier' some abnormal))
MP:0000282
abnormal interatrial septum morphology
HP:0011994
Abnormal atrial septum morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'internal ear') and ('has modifier' some abnormal))
MP:0000026
abnormal inner ear morphology
HP:0011390
Morphological abnormality of the inner ear
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'interventricular septum') and ('has modifier' some abnormal))
MP:0000281
abnormal interventricular septum morphology
HP:0010438
Abnormal ventricular septum morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'left cardiac atrium') and ('has modifier' some abnormal))
MP:0003923
abnormal heart left atrium morphology
HP:0025579
Abnormal left atrium morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'metatarsal bone') and ('has modifier' some abnormal))
MP:0003072
abnormal metatarsal bone morphology
HP:0001832
Abnormal metatarsal morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'postcranial axial skeleton') and ('has modifier' some abnormal))
MP:0002114
abnormal axial skeleton morphology
HP:0009121
Abnormal axial skeleton morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'pulmonary vein') and ('has modifier' some abnormal))
MP:0002726
abnormal pulmonary vein morphology
HP:0030968
Abnormal pulmonary vein morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'right cardiac atrium') and ('has modifier' some abnormal))
MP:0003922
abnormal heart right atrium morphology
HP:0025580
Abnormal right atrium morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some 'trabecular network of bone') and ('has modifier' some abnormal))
MP:0000130
abnormal trabecular bone morphology
HP:0100671
Abnormal trabecular bone morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some liver) and ('has modifier' some abnormal))
MP:0000598
abnormal liver morphology
HP:0410042
Abnormal liver morphology
abnormalMorphologyOfAnatomicalEntity
'has part' some (morphology and ('characteristic of' some vein) and ('has modifier' some abnormal))
MP:0002725
abnormal vein morphology
HP:0002624
Abnormal venous morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'aortic valve') and ('has modifier' some abnormal))
MP:0002747
abnormal aortic valve morphology
HP:0001646
Abnormal aortic valve morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'appendicular skeleton') and ('has modifier' some abnormal))
MP:0009250
abnormal appendicular skeleton morphology
HP:0011844
Abnormal appendicular skeleton morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'bony vertebral centrum') and ('has modifier' some abnormal))
MP:0000141
abnormal vertebral body morphology
HP:0003312
Abnormal form of the vertebral bodies
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'cerebral hemisphere white matter') and ('has modifier' some abnormal))
MP:0008026
abnormal brain white matter morphology
HP:0002500
Abnormal cerebral white matter morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'clavicle bone') and ('has modifier' some abnormal))
MP:0005298
abnormal clavicle morphology
HP:0000889
Abnormal clavicle morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'common carotid artery plus branches') and ('has modifier' some abnormal))
MP:0004181
abnormal carotid artery morphology
HP:0005344
Abnormal carotid artery morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'coronary artery') and ('has modifier' some abnormal))
MP:0004111
abnormal coronary artery morphology
HP:0006704
Abnormal coronary artery morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'facial skeleton') and ('has modifier' some abnormal))
MP:0005274
abnormal viscerocranium morphology
HP:0011821
Abnormality of facial skeleton
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'mitral valve') and ('has modifier' some abnormal))
MP:0000286
abnormal mitral valve morphology
HP:0001633
Abnormal mitral valve morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'pulmonary artery') and ('has modifier' some abnormal))
MP:0000484
abnormal pulmonary artery morphology
HP:0030966
Abnormal pulmonary artery morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'pulmonary valve') and ('has modifier' some abnormal))
MP:0002748
abnormal pulmonary valve morphology
HP:0001641
Abnormal pulmonary valve morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'secondary palate') and ('has modifier' some abnormal))
MP:0003755
abnormal palate morphology
HP:0000174
Abnormal palate morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some 'tricuspid valve') and ('has modifier' some abnormal))
MP:0002624
abnormal tricuspid valve morphology
HP:0001702
Abnormal tricuspid valve morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some aorta) and ('has modifier' some abnormal))
MP:0000272
abnormal aorta morphology
HP:0001679
Abnormal aortic morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some brain) and ('has modifier' some abnormal))
MP:0002152
abnormal brain morphology
HP:0012443
Abnormality of brain morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some bronchus) and ('has modifier' some abnormal))
MP:0002264
abnormal bronchus morphology
HP:0025426
Abnormal bronchus morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some ear) and ('has modifier' some abnormal))
MP:0002102
abnormal ear morphology
HP:0031703
Abnormal ear morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some heart) and ('has modifier' some abnormal))
MP:0000266
abnormal heart morphology
HP:0001627
Abnormal heart morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some skull) and ('has modifier' some abnormal))
MP:0000438
abnormal cranium morphology
HP:0000929
Abnormal skull morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some sternum) and ('has modifier' some abnormal))
MP:0000157
abnormal sternum morphology
HP:0000766
Abnormal sternum morphology
abnormalMorphologyOfPartOfAnatomicalEntity
'has part' some (morphology and ('characteristic of part of' some vertebra) and ('has modifier' some abnormal))
MP:0000137
abnormal vertebrae morphology
HP:0003468
Abnormal vertebral morphology
The text was updated successfully, but these errors were encountered:
There are matching MP-HPO terms where only the HPO term has an EQ, but the MP term of the pair does not have any.
See uPheno issue: obophenotype/upheno#898 (comment) .
I have created the table below with 37 of these pairs.
After your review, I can add these EQs to the appropriate MP terms in one go.
There are two patterns used for these in HPO:
The text was updated successfully, but these errors were encountered: