PredictiveValueFPs

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A repository for a project to examine the predictive value of frequent patterns.

• Analytics use case(s): Population-Level Estimation
• Study type: Clinical Application
• Tags: -
• Study lead: S.Ioannou
• Study start date: 10 July 2022
• Study end date: -
• Protocol: add protocol
• Publications: -
• Results explorer: -

Requirements

• A database in Common Data Model version 5 in one of these platforms: SQL Server, Oracle, PostgreSQL, IBM Netezza, Apache Impala, Amazon RedShift, Google BigQuery, or Microsoft APS.
• R version 4.0.5
• On Windows: RTools
• Java
• 100 GB of free disk space

How to run

1. Follow these instructions for setting up your R environment, including RTools and Java.

2. Open your study package in RStudio. Use the following code to install all the dependencies:

   install.packages("renv")
   renv::activate()
   renv::restore()

3. In RStudio, select 'Build' then 'Install and Restart' to install the PredictiveValueFPs package.

4. Before running the analysis, fill in the missing parts of the code provided under extras/CodeToRun_parallel.R and extras/ScriptToRunParallel.R. Then run the contents of the extras/CodeToRun_parallel.R to run the analysis.

License

The PredictiveValueFPs package is licensed under Apache License 2.0

Development

PredictiveValueFPs was developed in ATLAS and R Studio.

Development status

Manuscript preparation.