Here we simulate in a very simplified way processing of the tax declations. The snakemake workflow is run for every *_a.txt file in the data directory. To this file is added by concatenation another one with *_a.txt and placed in the folder data_processed. The report is packed in the envelope of the tax office *_e.txt file. Then, when all the final reports are produced in the reports folder, a marker file is produced for the completion of the work.
Install the minimal snakemake in your environment with conda
conda install -c bioconda -c conda-forge snakemake-minimal
Clone the exercise repo
git clone https://github.com/michalogit/snakemaketax.git
cd snakemaketax
Use the simple Snakefile for the first workflow run
cp Snakefile1 Snakefile
Do the dry run
snakemake -np
and the real run
snakemake -p
you can produce the graph too
snakemake --dag > graph1.dag
dot -Tpdf graph1.dag > graph1.pdf
The same exercise with the more complex Snakefile
cp Snakefile2 Snakefile
