to capture links to various resources
RDF interaction
- SPARQL Anything -- query local/remote documents with sparql, deploy local fuseki server with yasgui interface.
- YASGUI -- user interface for formulating SPARQL queries, with autocomplete.
- SPARKLIS -- interface that uses a controlled natural language to query SPARQL endpoints
- AtomGraph -- Linked Data Processor for SPARQL endpoints
- Sketch -- Compose/validate RDF and obtain a graphical visualization
- LodLive -- Explore SPARQL/IRI entities in a graphical manner.
- SPARQLNotebook -- SPARQL notebook for VSCode
- SPARQL-ML -- SPARQL microservices
- GRLC -- Expose SPARQL queries as serverless RESTful services
- SPARQL-Annotation-Syntax -- compatible with grlc services
- SANSA - SANSA is a big data engine for scalable processing of large-scale RDF data.
- OntoGen - RDF version control
- KinGVisher SPARQL endpoint graph visualization
- VoidGenerator
- SparqlEditor - yasgui with autocomplete
- Rudof - genenerate shex shapes and convert rdf
- Shexer - learn shex shapes from rdf files
RDF Graph Databases
- Virtuoso -- Virtuoso is a high-performance object-relational SQL database with WebDAV and SPARQL embedded into SQL for querying RDF data.
- GraphDB -- GraphDB is an enterprise ready Semantic Graph Database, compliant with W3C Standards.
- Blazegraph -- Blazegraph™ DB is a ultra high-performance graph database supporting Blueprints and RDF/SPARQL APIs.
- AllegroGraph -- AllegroGraph is a purpose built, horizontal sharding, high-performance, persistent, graph and document database
- Apache Jena TDB -- a native high performance triple store
- Apache Jena Fuseki
- Amazon Neptune -- hosted graph database
- RDFox -- in memory RDF triple store with reasoning
- OxiGraph -- Graph database based on RocksDb with SPARQL endpoint
RDF Validation
- SHACLOnlineValidator - online SHACL validator
- SoWasm - online RDF conversion tool
- EasyRDF Converter -- clean and transform RDF
- Turtle Validator
- YASHE -- A ShExeditor with syntax checking and autocomplete
- ShEx --
- ShEx forms -- Automatic form generation and ShEx validation tool by Eric P
- SHACL Playground -- validation tool for SHACL shapes
- SHACL Validator
- RDFShape -- to extract shapes from RDF graphs :: A Web app and library to extract SHACL/ShEx
- SheXer -- to extract shapes from RDF graphs :: A library for automatic extraction of SHACL/ShEx
- Shape Designer -- to extract shapes from RDF graphs :: A Java tool to extract SHACL/ShEx by Boneva et al
- Shapes induction method -- to extract shapes from RDF graphs :: RDF shape induction using knowledge base profiling to generate Shapes by Mihindukulasooriya et al.
- UnSHACLed -- to extract shapes from RDF graphs :: Defining constraints over RDF
- SHACLGEN -- to extract shapes from RDF graphs or Ontologies :: A Python library to extract SHACL shapes
- TopBraid Composer -- to extract shapes from RDF graphs or Ontologies
- TopBrain SHACL API
- Astrea -- to extract shapes from Ontologies :: Automatic extraction of SHACL shapes
- SHACL Play -- to extract shapes from Ontologies :: OWL to SHACL converter
- Shapes extraction using ontology patterns: -- to extract shapes from Ontologies :: Towards improving the quality of knowledge graphs with data-driven ontology patterns and SHACL by Spahiu et al.
- Protégé -- to define shapes manually
- Shaperone playground
Rule Learning & KG Embeddings
Explainable AI
- Awesome Graph Explainability - graph explainability papers
- KELPIE - XAI framework for interpreting Link Predictions on Knowledge Graphs
- SHAP - SHAP (SHapley Additive exPlanations) is a game theoretic approach to explain the output of any machine learning model.
- Pytorch Geometric - Pytorch GNN explainability
SPARQL Endpoints
- NeuroDKG
- FoodHealthClaims
- Bio2RDF
- Nanopubs
- GO
- UniProt
- DBPedia
- Wikidata -- GET only
- Wikipathways
- Riken
- RENCI-ubergraph
- KG-Hub
- LOD-by-OpenLink
- OMA - orthologous matrix
- Foodie-Cloud
- LSQ
- European Environment Agency
- LinkedLifeData
- EBI RDF - not functional (last checked 15-02-2023)
- SemOpenAlex
Knowledge Graphs
Health Data
Drug Resources
- DrugCentral - curated drug indications
- DrugMechDB - curated drug mechanisms of action
Synthetic Data Generation
- DPCGANS -DP-CGANS (Differentially Private - Conditional Generative Adversarial NetworkS)
- Syntho
- Synthetic Data Vault
- SynthEHR
Annotation
- Label Studio - Mixed annotation
- Prodigy - Annotation tool that uses active learning
- Hypothesis - Web page annotation
- Doccano - Text Annotation
Text Processing
Mapping
Data Portal
Companies of Interest
- relationalAI
- stardog
- metaphacts
- ontoforce
- Graphable
- KatanaGraph
- TigerGraphDb - scalable graph database
- origintrail - decentralized knowledge graph
Policy
Pipelines
- Orchest - visual python pipeline editor, executable over a kubernetes cluster
DeepLearning
- DiffSound - Text to Sound
- DALL-E2 - Text to Image
- GPT-4 - Text to Text
- CLIP- Contrastive Language-Image Pre-Training (CLIP)
- NExT-GPT - Any-to-Any Multi-modal GPT
- 4M - Apple's multi-modal language model
- StableDiffusion - A latent text-to-image diffusion model to generate photo-realistic images given any text input
- ExplainableAI - A list of xAI papers
- DGL -- Deep Graph Library is a Python package built for graph neural networks on top of existing DL frameworks (PyTorch, MXNet and TensorFlow)
- LangChain - Incorporates other elements with LLM
- CTransfomers - Python bindings for the Transformer models implemented in C/C++ using GGML library.
- GNNShap
Responsible AI
Drug Discovery
LLM
- LangChain - Build context-aware, reasoning applications
- LlamaIndex - LLamaIndex framework for LLM applications
- LLMWare - LLM with RAG
- OLLama - Run Llama 2, Code Llama, and other models
- VLLM - LLM inference and serving
- LLAMACPP - python bindings for c++ implementation to access llama models
- privateGPT - API to build private, context-aware AI application
- blindChat - in-browser privacy solution to make Conversational AI privacy-friendly
- Text Splitter Playground
- LLAMA2
- BEHRT - EHR Transformer
- BLOOM - open source multi-modal, multi-lingual transfomer
- AwesomeGraphLLM - list of papers and code for graph llms
- TruLens - LLM evaluation
- GraphRAG - GraphRAG from microsoft
- CrewAI - CrewAI