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Error message when tried to link to the page for OMP:0006026 #35

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dsiegele opened this issue Nov 17, 2019 · 0 comments
Open

Error message when tried to link to the page for OMP:0006026 #35

dsiegele opened this issue Nov 17, 2019 · 0 comments

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@dsiegele
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Did a search for "nitrogen utilization phenotype"
Clicked on one of the terms returned by the search: Category:OMP:0006026 ! nitrogen source utilization phenotype
Error message: A database query error has occurred. This may indicate a bug in the software.

[60e1dc6999b065659bbb8deb] /wiki/index.php?title=Category:OMP:0006026_!_nitrogen_source_utilization_phenotype Wikimedia\Rdbms\DBQueryError from line 1457 of /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php: A database query error has occurred. Did you forget to run your application's database schema updater after upgrading?
Query: SELECT * FROM obo_archive.term,obo_archive.term_revision WHERE (term.ontology_id = '1') AND (term.term_id = term_revision.term_id) AND (term.last_data_version = '978') ORDER BY term_rev_id DESC
Function: OntologyArchive2::getAllTermsByVersion
Error: 3 Error writing file '/tmp/MYrdckNI' (Errcode: 28 - No space left on device) (127.0.0.1:3308)

Backtrace:
#0 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1427): Wikimedia\Rdbms\Database->makeQueryException(string, integer, string, string)
#1 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1200): Wikimedia\Rdbms\Database->reportQueryError(string, integer, string, string, boolean)
#2 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1653): Wikimedia\Rdbms\Database->query(string, string)
#3 /usr/local/github/wiki-code/library/OntologyProject/OntologyDBI/OntologyArchive2.php(304): Wikimedia\Rdbms\Database->select(array, string, array, string, array)
#4 /usr/local/github/wiki-extensions/wiki-extensions-omp/OBOfig/OBOfig.php(111): OntologyArchive2->getAllTermsByVersion()
#5 /usr/local/github/wiki-extensions/wiki-extensions-omp/OBOfig/OBOfig.php(63): OBOfigure->__construct(NULL, array, Parser, PPTemplateFrame_DOM)
#6 /var/www/html/omp/wiki/includes/parser/Parser.php(3888): efOBOfigRender(NULL, array, Parser, PPTemplateFrame_DOM)
#7 /var/www/html/omp/wiki/includes/parser/Preprocessor_DOM.php(1362): Parser->extensionSubstitution(array, PPTemplateFrame_DOM)
#8 /var/www/html/omp/wiki/includes/parser/Parser.php(3305): PPFrame_DOM->expand(DOMElement)
#9 /var/www/html/omp/wiki/includes/parser/Preprocessor_DOM.php(1277): Parser->braceSubstitution(array, PPFrame_DOM)
#10 /var/www/html/omp/wiki/includes/parser/Parser.php(2942): PPFrame_DOM->expand(DOMElement, integer)
#11 /var/www/html/omp/wiki/includes/parser/Parser.php(1293): Parser->replaceVariables(string)
#12 /var/www/html/omp/wiki/includes/parser/Parser.php(443): Parser->internalParse(string)
#13 /var/www/html/omp/wiki/includes/content/WikitextContent.php(323): Parser->parse(string, Title, ParserOptions, boolean, boolean, integer)
#14 /var/www/html/omp/wiki/includes/content/AbstractContent.php(516): WikitextContent->fillParserOutput(Title, integer, ParserOptions, boolean, ParserOutput)
#15 /var/www/html/omp/wiki/includes/poolcounter/PoolWorkArticleView.php(144): AbstractContent->getParserOutput(Title, integer, ParserOptions)
#16 /var/www/html/omp/wiki/includes/poolcounter/PoolCounterWork.php(123): PoolWorkArticleView->doWork()
#17 /var/www/html/omp/wiki/includes/page/Article.php(604): PoolCounterWork->execute()
#18 /var/www/html/omp/wiki/includes/page/CategoryPage.php(69): Article->view()
#19 /usr/local/github/wiki-extensions/wiki-extensions-hulab/ExtendedCategoryPage/ExtendedCategoryPage.php(133): CategoryPage->view()
#20 /var/www/html/omp/wiki/includes/Hooks.php(177): ExtendedCategoryPageHooks::wfExtendedCategoryPage(CategoryPage)
#21 /var/www/html/omp/wiki/includes/Hooks.php(205): Hooks::callHook(string, array, array, NULL)
#22 /var/www/html/omp/wiki/includes/page/CategoryPage.php(60): Hooks::run(string, array)
#23 /var/www/html/omp/wiki/includes/actions/ViewAction.php(68): CategoryPage->view()
#24 /var/www/html/omp/wiki/includes/MediaWiki.php(500): ViewAction->show()
#25 /var/www/html/omp/wiki/includes/MediaWiki.php(294): MediaWiki->performAction(CategoryPage, Title)
#26 /var/www/html/omp/wiki/includes/MediaWiki.php(861): MediaWiki->performRequest()
#27 /var/www/html/omp/wiki/includes/MediaWiki.php(524): MediaWiki->main()
#28 /var/www/html/omp/wiki/index.php(42): MediaWiki->run()
#29 {main}

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