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Add OHDSI workspace service #3552

Merged
merged 16 commits into from
Jun 11, 2023
Merged

Add OHDSI workspace service #3552

merged 16 commits into from
Jun 11, 2023

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yuvalyaron
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What is being addressed

Added OHDSI workspace service.
Currently supports Synapse only.

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github-actions bot commented Jun 8, 2023

Unit Test Results

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Results for commit c869707.

♻️ This comment has been updated with latest results.

@marrobi marrobi mentioned this pull request Jun 8, 2023
@tamirkamara tamirkamara self-requested a review June 8, 2023 15:17
@yuvalyaron yuvalyaron marked this pull request as ready for review June 11, 2023 13:29
@yuvalyaron yuvalyaron merged commit c5347a9 into feature/ohdsi Jun 11, 2023
@yuvalyaron yuvalyaron deleted the adjust-ohdsi-to-oss branch June 11, 2023 14:46
yuvalyaron added a commit that referenced this pull request Jun 26, 2023
* add ohdsi workspace service (before adjustments to the OSS)

* add execute permission to scripts

* Fix Postgres timeouts when install OHDSI (#3559)

[ohdsi] fix postgres timeouts

* Add OHDSI workspace service (#3552)

* remove todos

* link core vnet to postgres private dns zone when deploying core

* remove synapse references, and add other data sources to the options

* remove postgres_core_dns_link references

* revert synapse reference deletions

* remove non supported dialects

* add execute permission to scripts

* make some of the daimons required

* add required zone field to postgres:
hashicorp/terraform-provider-azurerm#16888

* add fw rule to allow open id authentication in atlas

* fix firewall step

* add README

* update README

* fix linting errors

* fix linting errors

* update changelog

* Update CHANGELOG.md

Co-authored-by: Tamir Kamara <26870601+tamirkamara@users.noreply.github.com>

* add ohdsi ws service to the CI

* clarified  README

* added name, description and overview to the template_schema

* move README content to docs

* change default display name

* add diagram to and instructions about setting up the CDM data source

* add link to ohdsi-on-azure

* move ohdsi-on-azure to the top

* link to OHDSIonAzure for deploying synapse

* Update docs/tre-templates/workspace-services/ohdsi.md

Co-authored-by: Marcus Robinson <marrobi@microsoft.com>

* add Using a sample CDM data source section

---------

Co-authored-by: Tamir Kamara <26870601+tamirkamara@users.noreply.github.com>
Co-authored-by: Marcus Robinson <marrobi@microsoft.com>
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2 participants