devcontainer style improvements

.devcontainer/devcontainer.json

@@ -8,7 +8,9 @@
     "service": "app",
     "workspaceFolder": "/workspaces/${localWorkspaceFolderBasename}",
     // Prep some host side things for the container build
-    "initializeCommand": [".devcontainer/scripts/prep-container-build"],
+    "initializeCommand": [
+        ".devcontainer/scripts/prep-container-build"
+    ],
     // Make sure the container user can read/write to the package caches.
     "onCreateCommand": "sudo -n mkdir -p /opt/conda/pkgs/cache /var/cache/pip && sudo -n chown -R vscode /opt/conda/pkgs/cache /var/cache/pip",
     // Make sure the conda env is up to date with the source tree expectations.
@@ -43,40 +45,45 @@
                 "python.defaultInterpreterPath": "/opt/conda/envs/mlos/bin/python",
                 "python.testing.pytestPath": "/opt/conda/envs/mlos/bin/pytest",
                 "python.linting.pylintPath": "/opt/conda/envs/mlos/bin/pylint",
-                "pylint.path": ["/opt/conda/envs/mlos/bin/pylint"],
+                "pylint.path": [
+                    "/opt/conda/envs/mlos/bin/pylint"
+                ],
+                "python.linting.flake8Path": "/opt/conda/envs/mlos/bin/flake8",
                 "python.linting.mypyPath": "/opt/conda/envs/mlos/bin/mypy",
                 "mypy.dmypyExecutable": "/opt/conda/envs/mlos/bin/dmypy",
                 "mypy.runUsingActiveInterpreter": false
             },
             // Add the IDs of extensions you want installed when the container is created.
             "extensions": [
-                "EditorConfig.EditorConfig",
-                "streetsidesoftware.code-spell-checker",
-                "ms-python.vscode-pylance",
-                "ms-python.python",
-                "ms-python.pylint",
-                "matangover.mypy",
+                "davidanson.vscode-markdownlint",
+                "donjayamanne.githistory",
                 "donjayamanne.python-environment-manager",
-                "njpwerner.autodocstring",
-                "ms-toolsai.jupyter",
+                "eamodio.gitlens",
+                "editorconfig.editorconfig",
+                "esbenp.prettier-vscode",
+                "github.copilot",
+                "github.vscode-github-actions",
+                "github.vscode-pull-request-github",
+                "gruntfuggly.todo-tree",
+                "hashicorp.terraform",
+                "huntertran.auto-markdown-toc",
+                "ibm.output-colorizer",
                 "lextudio.restructuredtext",
-                "trond-snekvik.simple-rst",
-                "DavidAnson.vscode-markdownlint", // Linter for markdown files
-                "huntertran.auto-markdown-toc", // Auto-generated Markdown Table of Contents
-                "github.vscode-github-actions", // GitHub Actions integration
+                "matangover.mypy",
                 "ms-azuretools.vscode-docker",
-                "waderyan.gitblame", // Enhances git blame experience
-                "donjayamanne.githistory", // Enhanced git history experience
-                "eamodio.gitlens",
-                "ms-vsliveshare.vsliveshare", // Allows easy code share
-                "Gruntfuggly.todo-tree", // Highlights TODO comments in code
-                "github.copilot", // Copilot integration
-                "IBM.output-colorizer", // Colorize your output/test logs
-                "hashicorp.terraform", // Terraform syntax highlighting
-                "redhat.vscode-yaml", // Kubernetes manifest syntax highlighting
-                "stkb.rewrap", // "Alt + Q" -> rewrap comments after n characters on one line
-                "tyriar.sort-lines", // "Ctrl + Shift + P -> Sort lines" -> sort lines alphabetically
-                "esbenp.prettier-vscode" // A pretty good formatter for many languages
+                "ms-python.autopep8",
+                "ms-python.flake8",
+                "ms-python.pylint",
+                "ms-python.python",
+                "ms-python.vscode-pylance",
+                "ms-vsliveshare.vsliveshare",
+                "njpwerner.autodocstring",
+                "redhat.vscode-yaml",
+                "stkb.rewrap",
+                "streetsidesoftware.code-spell-checker",
+                "trond-snekvik.simple-rst",
+                "tyriar.sort-lines",
+                "waderyan.gitblame"
             ]
         }
     }

.prettierrc

@@ -0,0 +1,4 @@
+{
+    "editorconfig": true,
+    "trailingComma": "es5"
+}

.pylintrc

@@ -8,7 +8,7 @@ fail-under=9.8
 # See Also: https://github.com/PyCQA/pydocstyle/issues/309#issuecomment-1426642147
 # Also fail on unused imports.
 fail-on=
-    C0116,
+    missing-function-docstring,
     unused-import
 
 # Ignore pylint complaints about an upstream dependency.

.vscode/extensions.json

@@ -1,30 +1,33 @@
 {
     "recommendations": [
-        "EditorConfig.EditorConfig",
-        "streetsidesoftware.code-spell-checker",
-        "ms-python.vscode-pylance",
-        "ms-python.python",
-        "ms-python.pylint",
-        "matangover.mypy",
+        "davidanson.vscode-markdownlint",
+        "donjayamanne.githistory",
         "donjayamanne.python-environment-manager",
-        "njpwerner.autodocstring",
+        "eamodio.gitlens",
+        "editorconfig.editorconfig",
+        "esbenp.prettier-vscode",
+        "github.copilot",
+        "github.vscode-github-actions",
+        "github.vscode-pull-request-github",
+        "gruntfuggly.todo-tree",
+        "hashicorp.terraform",
+        "huntertran.auto-markdown-toc",
+        "ibm.output-colorizer",
         "lextudio.restructuredtext",
-        "trond-snekvik.simple-rst",
-        "DavidAnson.vscode-markdownlint", // Linter for markdown files
-        "huntertran.auto-markdown-toc", // Auto-generated Markdown Table of Contents
-        "github.vscode-github-actions", // GitHub Actions integration
+        "matangover.mypy",
         "ms-azuretools.vscode-docker",
-        "waderyan.gitblame", // Enhances git blame experience
-        "donjayamanne.githistory", // Enhanced git history experience
-        "eamodio.gitlens",
-        "ms-vsliveshare.vsliveshare", // Allows easy code share
-        "Gruntfuggly.todo-tree", // Highlights TODO comments in code
-        "github.copilot", // Copilot integration
-        "IBM.output-colorizer", // Colorize your output/test logs
-        "hashicorp.terraform", // Terraform syntax highlighting
-        "redhat.vscode-yaml", // Kubernetes manifest syntax highlighting
-        "stkb.rewrap", // "Alt + Q" -> rewrap comments after n characters on one line
-        "tyriar.sort-lines", // "Ctrl + Shift + P -> Sort lines" -> sort lines alphabetically
-        "esbenp.prettier-vscode" // A pretty good formatter for many languages
+        "ms-python.autopep8",
+        "ms-python.flake8",
+        "ms-python.pylint",
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        "ms-vsliveshare.vsliveshare",
+        "njpwerner.autodocstring",
+        "redhat.vscode-yaml",
+        "stkb.rewrap",
+        "streetsidesoftware.code-spell-checker",
+        "trond-snekvik.simple-rst",
+        "tyriar.sort-lines",
+        "waderyan.gitblame"
     ]
 }

.vscode/settings.json

@@ -10,7 +10,8 @@
     "python.linting.pylintEnabled": true,
     "python.linting.pycodestyleEnabled": true,
     "python.linting.pydocstyleEnabled": true,
-    "python.linting.mypyEnabled": false,            // use the dmypy daemon extension instead - it's faster
+    "python.linting.flake8Enabled": true,
+    "python.linting.mypyEnabled": false, // use the dmypy daemon extension instead - it's faster
     // "mypy.runUsingActiveInterpreter": true,      // in the devcontainer we override this to use an explicit path
     "autoDocstring.docstringFormat": "numpy",
     "json.validate.enable": true,
@@ -50,5 +51,14 @@
         "--ignore D001"
     ],
     "esbonio.sphinx.confDir": "${workspaceFolder}/doc/source",
-    "esbonio.sphinx.buildDir": "${workspaceFolder}/doc/build/"
+    "esbonio.sphinx.buildDir": "${workspaceFolder}/doc/build/",
+    "editor.formatOnSave": true,
+    "editor.formatOnSaveMode": "modifications",
+    "editor.defaultFormatter": "esbenp.prettier-vscode",
+    "python.formatting.provider": "none",
+    "[python]": {
+        "editor.defaultFormatter": "ms-python.autopep8",
+        "editor.formatOnSave": true,
+        "editor.formatOnSaveMode": "modifications"
+    }
 }

Makefile

@@ -19,7 +19,7 @@ MKDIR_BUILD := $(shell test -d build || mkdir build)
 
 # Run make in parallel by default.
 MAKEFLAGS += -j$(shell nproc)
-MAKEFLAGS += -Oline
+#MAKEFLAGS += -Oline
 
 .PHONY: all
 all: check test dist dist-test doc licenseheaders

conda-envs/mlos-3.10.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

conda-envs/mlos-3.11.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

conda-envs/mlos-3.8.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

conda-envs/mlos-3.9.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

conda-envs/mlos-windows.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

conda-envs/mlos.yml

@@ -9,6 +9,7 @@ dependencies:
   - pycodestyle
   - autopep8
   - pydocstyle
+  - flake8
   - setuptools
   - setuptools-scm
   - jupyter

mlos_bench/setup.py

@@ -18,14 +18,14 @@
     from setuptools_scm import get_version
     version = get_version(root='..', relative_to=__file__)
     if version is not None:
-        _VERSION = version
+        _VERSION = version  # noqa: F811
 except ImportError:
     warning("setuptools_scm not found, using version from _version.py")
 except LookupError as e:
     warning(f"setuptools_scm failed to find git version, using version from _version.py: {e}")
 
 
-extra_requires: Dict[str, List[str]] = {
+extra_requires: Dict[str, List[str]] = {    # pylint: disable=consider-using-namedtuple-or-dataclass
     # Additional tools for extra functionality.
     'azure': ['azure-storage-file-share'],
     'storage-sql-duckdb': ['sqlalchemy', 'duckdb_engine'],

mlos_core/setup.py

@@ -18,14 +18,14 @@
     from setuptools_scm import get_version
     version = get_version(root='..', relative_to=__file__)
     if version is not None:
-        _VERSION = version
+        _VERSION = version  # noqa: F811
 except ImportError:
     warning("setuptools_scm not found, using version from _version.py")
 except LookupError as e:
     warning(f"setuptools_scm failed to find git version, using version from _version.py: {e}")
 
 
-extra_requires: Dict[str, List[str]] = {
+extra_requires: Dict[str, List[str]] = {  # pylint: disable=consider-using-namedtuple-or-dataclass
     'emukit': ['emukit'],
     'skopt': ['scikit-optimize<=0.9.0'],  # FIXME: temporarily work around some version mismatch issues (PR 850)
 }
@@ -52,10 +52,10 @@
         '': ['py.typed', '**/*.pyi'],
     },
     install_requires=[
-        'scikit-learn<1.2', # FIXME: temporarily work around some version mismatch issues (PR 850)
-        'joblib>=1.1.1',    # CVE-2022-21797: scikit-learn dependency, addressed in 1.2.0dev0, which isn't currently released
+        'scikit-learn<1.2',     # FIXME: temporarily work around some version mismatch issues (PR 850)
+        'joblib>=1.1.1',        # CVE-2022-21797: scikit-learn dependency, addressed in 1.2.0dev0, which isn't currently released
         'scipy>=1.3.2',
-        'numpy<1.24',       # FIXME: temporarily work around some version mismatch issues (PR 850)
+        'numpy<1.24',           # FIXME: temporarily work around some version mismatch issues (PR 850)
         'pandas>=1.0.3',
         'ConfigSpace>=0.6.1',
     ],

setup.cfg

@@ -4,12 +4,9 @@ universal = 1
 
 [pycodestyle]
 count = True
-# E124: Closing bracket does not match indentation of opening bracket's line
-# E261: At least two spaces before inline comment
-# E502: The backslash is redundant between brackets
 # W503: Line break occurred before a binary operator
 # W504: Line break occurred after a binary operator
-ignore = E124,E261,E502,W503,W504
+ignore = W503,W504
 format = pylint
 # See Also: .editorconfig, .pylintrc
 max-line-length = 132