Version update and resource estimation fixes

[sam-jaques]

These modifications update the code to Q# version 0.27.244707 (mainly through changes to the wrapper files).

More significant other changes are:

• switches the qubit handling to be more direct, passing auxiliary qubits manually instead of with the "use" keyword, to avoid the depth-width bug (Depth and Width are inconsistent qsharp-runtime#1037).

• replaces all permutations with classical logic to permute the qubits (i.e., it will produce a new qubit array with the qubit objects in rearranged positions).

• adds an extra large measurement to the uncomputation of each AND gate, to avoid this bug TraceSimulator and ResourcesEstimator depth is incorrect with measurements qsharp-runtime#1116

• switches to a slightly lower-cost AND gate uncomputation circuit

[sam-jaques]

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