BUG: Default parameters in DeepSMILECRCk container

[harshita-s]

We use caching with pre-trained encoders in DeepMIL for TCGA-CRCk. This is now enabled by default in DeepSMILECRCk container through the is_caching parameter, by setting it to True. Also, num_top_slides is set to 0 by default, to avoid errors arising from caching in outputs handler for TCGA-CRCk.

[kenza-bouzid]

LGTM, please keep in mind that setting num_top_slides to 0 disables top and bottom tiles plots and not slides outputs. Slides outputs (thumbnails and attention heatmaps) are disabled by default if a SlidesDataset is not provided which is the case for TCGACrck.

[codecov]

Codecov Report

Merging #440 (40ce46e) into main (703845a) will not change coverage.
The diff coverage is n/a.

Flag	Coverage Δ
hi-ml-histopathology	79.05% <ø> (ø)

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Impacted Files	Coverage Δ
...opathology/configs/classification/DeepSMILECrck.py	63.63% <ø> (ø)

[harshita-s]

LGTM, please keep in mind that setting num_top_slides to 0 disables top and bottom tiles plots and not slides outputs. Slides outputs (thumbnails and attention heatmaps) are disabled by default if a SlidesDataset is not provided which is the case for TCGACrck.

Thank you @kenza-bouzid. I have modified the description now.