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ENH: Add openslide to cpath conda environment #646

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merged 17 commits into from
Nov 10, 2022
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@ant0nsc ant0nsc commented Nov 3, 2022

Add openslide to hi-ml-cpath conda environment, so that code can use either cucim or openslide as backend.

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codecov bot commented Nov 9, 2022

Codecov Report

Merging #646 (c7d6d71) into main (bc32798) will increase coverage by 8.85%.
The diff coverage is n/a.

Impacted file tree graph

Flag Coverage Δ
hi-ml-cpath 76.94% <ø> (+20.59%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
...-ml-cpath/src/SSL/configs/PANDA_SimCLRContainer.py 57.89% <0.00%> (ø)
.../SSL/lightning_modules/byol/byol_moving_average.py 100.00% <0.00%> (ø)
hi-ml-cpath/src/SSL/ssl_augmentation_config.py 100.00% <0.00%> (ø)
...l-cpath/src/SSL/lightning_modules/simclr_module.py 100.00% <0.00%> (ø)
hi-ml-cpath/src/SSL/data/cifar_datasets.py 90.00% <0.00%> (ø)
hi-ml-cpath/src/SSL/configs/CovidContainers.py 87.50% <0.00%> (ø)
hi-ml-cpath/src/SSL/configs/CIFAR_SSL_configs.py 90.90% <0.00%> (ø)
hi-ml-cpath/src/SSL/data/io_util.py 75.86% <0.00%> (ø)
...c/SSL/lightning_containers/ssl_image_classifier.py 93.10% <0.00%> (ø)
.../src/SSL/lightning_modules/ssl_online_evaluator.py 89.79% <0.00%> (ø)
... and 35 more

@ant0nsc ant0nsc enabled auto-merge (squash) November 9, 2022 22:15
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@kenza-bouzid kenza-bouzid left a comment

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LGTM

@ant0nsc ant0nsc merged commit b711b2b into main Nov 10, 2022
@ant0nsc ant0nsc deleted the antonsc/openslide branch November 10, 2022 09:38
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3 participants