CodeQlFilters.yml: Filter updates (#295)

## Description

1. Fixes an issue where:

   `"-MdeModulePkg/Universal/RegularExpressionDxe/oniguruma/src/**.c:*"`

   should be

   `"-MdeModulePkg/Universal/RegularExpressionDxe/oniguruma/src/**/*.c:*"`

2. Updates `cpp/unguardednullreturndereference` in some places to be
   `SM02311` which is the query ID used for matching filters.

3. Sorts queries so related filters are closer together and files are
   easier to find.

- [ ] Impacts functionality?
  - **Functionality** - Does the change ultimately impact how firmware functions?
  - Examples: Add a new library, publish a new PPI, update an algorithm, ...
- [ ] Impacts security?
  - **Security** - Does the change have a direct security impact on an application,
    flow, or firmware?
  - Examples: Crypto algorithm change, buffer overflow fix, parameter
    validation improvement, ...
- [ ] Breaking change?
  - **Breaking change** - Will anyone consuming this change experience a break
    in build or boot behavior?
  - Examples: Add a new library class, move a module to a different repo, call
    a function in a new library class in a pre-existing module, ...
- [ ] Includes tests?
  - **Tests** - Does the change include any explicit test code?
  - Examples: Unit tests, integration tests, robot tests, ...
- [ ] Includes documentation?
  - **Documentation** - Does the change contain explicit documentation additions
    outside direct code modifications (and comments)?
  - Examples: Update readme file, add feature readme file, link to documentation
    on an a separate Web page, ...

## How This Was Tested

CodeQL CLI plugin.

## Integration Instructions

N/A - Repos should pick up this file when possible that run CodeQL to
have the latest filter changes (most pick it up through mu_basecore submodules).

Signed-off-by: Michael Kubacki <michael.kubacki@microsoft.com>

CodeQlFilters.yml

@@ -10,35 +10,38 @@
 
 {
   "Filters": [
-    "-MdePkg/Library/UefiDevicePathLib/DevicePathFromText.c:SM02311",
-    "-MdePkg/Library/UefiDevicePathLib/DevicePathUtilities.c:SM02311",
-    "-MdePkg/Library/UefiDevicePathLibDevicePathProtocol/UefiDevicePathLib.c:SM02311",
+    "-CryptoPkg/Library/BaseCryptLib/**/*.c:SM02690",
+    "-CryptoPkg/Library/BaseCryptLib/Pk/CryptDh.c:SM02311",
+    "-CryptoPkg/Library/BaseCryptLib/Pk/CryptRsaBasic.c:SM02311",
+    "-CryptoPkg/Library/BaseCryptLib/SysCall/TimerWrapper.c:SM02320",
+    "-CryptoPkg/Library/OpensslLib/**/*.c:*",
+    "-MdeModulePkg/Bus/Pci/PciBusDxe/PciResourceSupport.c:SM02311",
+    "-MdeModulePkg/Core/Pei/Ppi/Ppi.c:cpp/overflow-buffer",
     "-MdeModulePkg/Library/UefiBootManagerLib/BmConsole.c:SM02311",
     "-MdeModulePkg/Library/UefiBootManagerLib/BmMisc.c:SM02311",
-    "-ShellPkg/Library/UefiShellLevel3CommandsLib/Alias.c:SM02311",
-    "-ShellPkg/Library/UefiShellDebug1CommandsLib/DmpStore.c:SM02311",
-    "-ShellPkg/Library/UefiShellLevel2CommandsLib/Map.c:SM02311",
+    "-MdeModulePkg/Universal/Acpi/S3SaveStateDxe/AcpiS3ContextSave.c:SM02311",
+    "-MdeModulePkg/Universal/BdsDxe/BdsEntry.c:SM02311",
+    "-MdeModulePkg/Universal/Console/ConPlatformDxe/ConPlatform.c:SM02311",
+    "-MdeModulePkg/Universal/Disk/UdfDxe/FileName.c:cpp/uselesstest",
+    "-MdeModulePkg/Universal/Disk/UdfDxe/FileName.c:cpp/uselesstest",
     "-MdeModulePkg/Universal/Disk/UdfDxe/FileName.c:cpp/uselesstest",
-    "-MdeModulePkg/Universal/EbcDxe/EbcDebugger/EdbSupportString.c:cpp/uselesstest",
     "-MdeModulePkg/Universal/Disk/UdfDxe/FileSystemOperations.c:cpp/uselesstest",
-    "-MdeModulePkg/Core/Pei/Ppi/Ppi.c:cpp/overflow-buffer",
+    "-MdeModulePkg/Universal/DriverSampleDxe/**:*",
+    "-MdeModulePkg/Universal/EbcDxe/EbcDebugger/EdbSupportString.c:cpp/uselesstest",
+    "-MdeModulePkg/Universal/EbcDxe/EbcDebugger/EdbSupportString.c:cpp/uselesstest",
+    "-MdeModulePkg/Universal/RegularExpressionDxe/oniguruma/src/**/*.c:*",
+    "-MdePkg/Library/UefiDevicePathLib/DevicePathFromText.c:SM02311",
+    "-MdePkg/Library/UefiDevicePathLib/DevicePathUtilities.c:SM02311",
+    "-MdePkg/Library/UefiDevicePathLibDevicePathProtocol/UefiDevicePathLib.c:SM02311",
     # Todo: Exclude for now, needs more review and testing
     "-NetworkPkg/Ip6Dxe/Ip6Output.c:SM02313",
     # Todo: Exclude for now, needs more review and testing
     "-NetworkPkg/Ip6Dxe/Ip6Output.c:cpp/likely-bugs/memory-management/v2/conditionally-uninitialized-variable",
     "-ShellPkg/Application/Shell/ShellManParser.c:cpp/redundant-null-check-param",
     "-ShellPkg/Library/UefiShellAcpiViewCommandLib/Parsers/Aest/AestParser.c:cpp/overflow-buffer",
     "-ShellPkg/Library/UefiShellAcpiViewCommandLib/Parsers/Iort/IortParser.c:cpp/overflow-buffer",
-
-    "-MdeModulePkg/Universal/Disk/UdfDxe/FileName.c:cpp/uselesstest",
-    "-MdeModulePkg/Bus/Pci/PciBusDxe/PciResourceSupport.c:SM02311",
-    "-MdeModulePkg/Universal/DriverSampleDxe/**:*",
-    "-MdeModulePkg/Universal/EbcDxe/EbcDebugger/EdbSupportString.c:cpp/uselesstest",
-    "-MdeModulePkg/Universal/RegularExpressionDxe/oniguruma/src/**.c:*",
-    "-MdeModulePkg/Library/UefiBootManagerLib/BmMisc.c:cpp/unguardednullreturndereference",
-    "-MdeModulePkg/Universal/Acpi/S3SaveStateDxe/AcpiS3ContextSave.c:cpp/unguardednulllreturndereference",
-    "-MdeModulePkg/Universal/Disk/UdfDxe/FileName.c:cpp/uselesstest",
-    "-MdeModulePkg/Universal/BdsDxe/BdsEntry.c:cpp/unguardednullreturndereference",
-    "-MdeModulePkg/Core/Pei/Ppi/Ppi.c:cpp/overflow-buffer",
+    "-ShellPkg/Library/UefiShellDebug1CommandsLib/DmpStore.c:SM02311",
+    "-ShellPkg/Library/UefiShellLevel2CommandsLib/Map.c:SM02311",
+    "-ShellPkg/Library/UefiShellLevel3CommandsLib/Alias.c:SM02311",
   ]
 }