chore: bump some dependencies

[dgozman]

Resolves some audits/alerts.

• @modelcontextprotocol/sdk to 1.25.2;
• zod-to-json-schema to 3.25.1;
• qs to 6.14.1.

Unfortunately, re-exporting zodToJsonSchema type from the bundle now results in error TS2589: Type instantiation is excessively deep and possibly infinite. errors in some places. I removed the exact type, since the result is always immediately type-casted everywhere.

Also fix some type issues found after version bumps.

[yury-s]

For the context, this was reported upstream. Among other things the compilation became a few times slower and tsc was OOMing. Let's make sure that it doesn't regress compilation time significantly.

[yury-s]

lgtm provided the compilation time is acceptable. I don't see much progress on the upstream issue unfortunately.

[dgozman]

lgtm provided the compilation time is acceptable. I don't see much progress on the upstream issue unfortunately.

Here are measurements on my laptop:

# without this PR
npm run tsc  18.03s user 0.68s system 223% cpu 8.358 total
npm run tsc  18.29s user 0.68s system 228% cpu 8.290 total

# with this PR
npm run tsc  17.35s user 0.60s system 227% cpu 7.884 total
npm run tsc  17.32s user 0.56s system 232% cpu 7.686 total

It looks like as any cuts off some work 😄

[github-actions]

Test results for "tests 1"

2 failed
❌ [playwright-test] › playwright.spec.ts:877 › page.pause() should disable test timeout @macos-latest-node20
❌ [playwright-test] › ui-mode-test-setup.spec.ts:315 › web-mode: true › should run teardown with SIGINT @macos-latest-node20

3 flaky

⚠️ [firefox-library] › library/inspector/cli-codegen-1.spec.ts:1082 › cli codegen › should not throw csp directive violation errors `@firefox-ubuntu-22.04-node20`
⚠️ [firefox-library] › library/inspector/cli-codegen-pick-locator.spec.ts:35 › should update locator highlight `@firefox-ubuntu-22.04-node20`
⚠️ [playwright-test] › ui-mode-trace.spec.ts:796 › should update state on subsequent run `@macos-latest-node20`

34556 passed, 691 skipped

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Merge workflow run.

[github-actions]

Test results for "MCP"

3 failed
❌ [chromium] › mcp/sse.spec.ts:233 › sse transport shared context @mcp-macos-15
❌ [firefox] › mcp/test-debug.spec.ts:48 › test_debug (pause/resume) @mcp-macos-15
❌ [firefox] › mcp/test-debug.spec.ts:167 › test_debug (pause/snapshot/resume) @mcp-macos-15

2827 passed, 121 skipped

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Merge workflow run.