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Adding dataset from MOSAIKS paper #363

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merged 67 commits into from
Feb 27, 2022
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0620f6b
Adding dataset from MOSAIKS paper
iejMac Jan 20, 2022
09b4faf
Name change
iejMac Jan 21, 2022
fa869cc
implementing NAIPTileIndex in USAVars
iejMac Jan 24, 2022
501216b
lookup_point works
iejMac Jan 24, 2022
66e2c1c
Merge branch 'main' of https://github.com/iejMac/torchgeo into mosaik…
iejMac Feb 22, 2022
48f6c9b
usavars: adding extract + verify
iejMac Feb 22, 2022
be354d7
USAVars: add md5
iejMac Feb 22, 2022
8b8ca79
initial _load_files function
iejMac Feb 22, 2022
b57b7ee
adding plotting
iejMac Feb 22, 2022
ec84d89
formatting
iejMac Feb 22, 2022
b78ee80
add description
iejMac Feb 23, 2022
0311f4e
black fix
iejMac Feb 23, 2022
ebbf9d0
flake8 fix
iejMac Feb 23, 2022
b0d34c9
pydocstyle fix
iejMac Feb 23, 2022
062c9f8
mypy fix
iejMac Feb 23, 2022
7bffb9c
add DS to docs
iejMac Feb 23, 2022
168f989
black fix
iejMac Feb 23, 2022
7e940e1
fake dataset
iejMac Feb 23, 2022
8837898
add transforms arg
iejMac Feb 23, 2022
0a880b5
initial tests
iejMac Feb 23, 2022
61739b7
fix black flake8 isort
iejMac Feb 23, 2022
b5e2512
fix black flake8
iejMac Feb 23, 2022
74aaab4
fix black
iejMac Feb 23, 2022
a47e2fb
fix mypy
iejMac Feb 23, 2022
e081de8
test fixes
iejMac Feb 23, 2022
73a87f8
testing something
iejMac Feb 23, 2022
efb8360
it finds zip but not csv
iejMac Feb 23, 2022
dea3703
fake csv files didn't get added
iejMac Feb 23, 2022
81afd9a
pandas docs fix
iejMac Feb 23, 2022
bd75a00
forgot to take out here
iejMac Feb 23, 2022
bd90b5e
need to add in functions
iejMac Feb 23, 2022
d1deebf
round plot labels
iejMac Feb 23, 2022
0e6202a
Small edits
calebrob6 Feb 23, 2022
d6bc60f
remove Unnamed column
iejMac Feb 23, 2022
bf77ea3
zipfile change
iejMac Feb 23, 2022
9e63d67
i think this solves codecov?
iejMac Feb 23, 2022
18a1904
there needs to be a test
iejMac Feb 23, 2022
2820635
codecov
iejMac Feb 23, 2022
dd9b3b7
bring back UAR!
iejMac Feb 24, 2022
b45a4c3
remove intermediate directory
iejMac Feb 24, 2022
c1f9345
fix flake8
iejMac Feb 24, 2022
705ffca
No more iteration in load_files
iejMac Feb 24, 2022
8a72999
dont' use Any
iejMac Feb 24, 2022
d28a6e4
check if all csv files exist
iejMac Feb 25, 2022
faf6f21
Add docstring to init
iejMac Feb 25, 2022
5e75097
use index col = ID
iejMac Feb 25, 2022
5626062
labels in as list
iejMac Feb 25, 2022
f57f999
adjust to only 3 labels + adjust tests
iejMac Feb 25, 2022
9f24afb
citation
iejMac Feb 25, 2022
e97939a
remove testing file
iejMac Feb 25, 2022
2ba7e6b
no need to rename zipfile
iejMac Feb 25, 2022
fca13f6
adding data.py to test data + adjusting tests
iejMac Feb 25, 2022
07f942f
formatting fixes
iejMac Feb 25, 2022
681321e
style fix
iejMac Feb 25, 2022
da8040b
docstring
iejMac Feb 25, 2022
f30b50e
Docstring
calebrob6 Feb 25, 2022
eb81d7c
Fixing docstring
calebrob6 Feb 25, 2022
fb49f5d
docstring for labels
iejMac Feb 26, 2022
5e4f2b9
kjMerge branch 'mosaiks_dataset' of https://github.com/iejMac/torchge…
iejMac Feb 26, 2022
8243b30
Adding all csv files to data + checking for all 7 labels instead of j…
iejMac Feb 26, 2022
d518683
docstrings
iejMac Feb 27, 2022
72459ca
docstring
iejMac Feb 27, 2022
fdf8ee7
ensure labels are valid
iejMac Feb 27, 2022
1d0d0ae
pydocstyle fix
iejMac Feb 27, 2022
9199844
cast to list
iejMac Feb 27, 2022
c64876c
remove typos
iejMac Feb 27, 2022
0925b64
Requested changes
calebrob6 Feb 27, 2022
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docstring
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iejMac committed Feb 25, 2022
commit da8040b1df5520ad9498be97e3d74302419cb308
4 changes: 4 additions & 0 deletions torchgeo/datasets/usavars.py
Original file line number Diff line number Diff line change
@@ -21,6 +21,10 @@
class USAVars(VisionDataset):
"""USAVars dataset.

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The USAVars dataset is a compilation of regression tasks
on NAIP imagery at lon, lat points sourced from:
https://doi.org/10.1038/s41467-021-24638-z

Dataset format:
* images are 4-channel tifs
* labels are singular float values