Bug fix: add '_' to list of out-of-frame characters

mikessh · Jun 30, 2015 · e83c2e5 · e83c2e5
1 parent 83d9a9e
commit e83c2e5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/groovy/com/antigenomics/vdjtools/util/CommonUtil.groovy b/src/main/groovy/com/antigenomics/vdjtools/util/CommonUtil.groovy
@@ -368,7 +368,7 @@ public class CommonUtil {
         matcher ? (matcher.start() - 1) : -1
     }
 
-    final static String OOF_SYMBOLS_POSSIBLE = /([atgc#~\?])+/, OOF_CHAR = "_", STOP_CHAR = "*"
+    final static String OOF_SYMBOLS_POSSIBLE = /([atgc#~_\?])+/, OOF_CHAR = "_", STOP_CHAR = "*"
 
     static String translate(String seq) {
         if (seq.length() == 0)