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Additional copyright update.
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dbolotin committed Aug 22, 2018
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5 changes: 3 additions & 2 deletions LICENSE
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Expand Up @@ -9,8 +9,9 @@ provided that the above copyright notice, this paragraph and the following
three paragraphs appear in all copies.

Those desiring to incorporate this work into commercial products or use for
commercial purposes should contact the Inventors using the following email
addresses: licensing@milaboratory.com
commercial purposes should contact MiLaboratory LLC, which owns exclusive
rights for distribution of this program for commercial purposes, using the
following email address: licensing@milaboratory.com.

IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions pom.xml
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~ three paragraphs appear in all copies.
~
~ Those desiring to incorporate this work into commercial products or use for
~ commercial purposes should contact the Inventors using the following email
~ addresses: licensing@milaboratory.com
~ commercial purposes should contact MiLaboratory LLC, which owns exclusive
~ rights for distribution of this program for commercial purposes, using the
~ following email address: licensing@milaboratory.com.
~
~ IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
~ SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AlignmentsProvider.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AlignmentsToClonesMappingContainer.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AssembledReadsPort.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AssemblerEvent.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AssemblerEventLogger.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/AssemblerUtils.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAccumulator.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAssembler.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAssemblerListener.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAssemblerParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAssemblerParametersPresets.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneAssemblerRunner.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneClusteringParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneClusteringStrategy.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneFactory.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/CloneFactoryParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/ClusteringFilter.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/DClonalAlignerParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/IO.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/ReadToCloneMapping.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/RelativeConcentrationFilter.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/VDJCAlignmentsReaderWrapper.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/assembler/VJCClonalAlignerParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/ClonalSequence.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/ClonalUpdatableParameters.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/Clone.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/CloneSet.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/CloneSetIO.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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5 changes: 3 additions & 2 deletions src/main/java/com/milaboratory/mixcr/basictypes/CompatibilityIO.java
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* three paragraphs appear in all copies.
*
* Those desiring to incorporate this work into commercial products or use for
* commercial purposes should contact the Inventors using the following email
* addresses: licensing@milaboratory.com
* commercial purposes should contact MiLaboratory LLC, which owns exclusive
* rights for distribution of this program for commercial purposes, using the
* following email address: licensing@milaboratory.com.
*
* IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
* SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
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