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Merge pull request #1285 from milaboratory/changelog-edited
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mizraelson authored Jul 30, 2023
2 parents 6f095dd + d5d90f3 commit 8b36b94
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4 changes: 2 additions & 2 deletions changelogs/v4.4.2.md
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- long-read J gene aligner optimization
- aligner changed for flairr-seq preset to long-read dedicated one
- quality trimming is disabled for long-read aligner
- presets has been optimized by specifying a single reverse/direct alignment mode
- removed qc reports for clustered alignments and clones
- removed qc reports for clustered alignments and clones
- The following presets have been optimized by specifying a single reverse/direct alignment mode and now work faster: `takara-human-rna-bcr-umi-smartseq`, `takara-human-rna-bcr-umi-smarter`,`takara-human-rna-tcr-umi-smartseq`,`takara-human-rna-tcr-umi-smarter-v2`,`takara-human-rna-tcr-smarter`,`takara-mouse-rna-bcr-smarter`,`takara-mouse-rna-tcr-smarter`,`10x-sc-xcr-vdj`,`10x-sc-5gex`,`abhelix-human-rna-xcr`,`bd-human-sc-xcr-rhapsody-cdr3`,`bd-mouse-sc-xcr-rhapsody-cdr3`,`bd-sc-xcr-rhapsody-full-length`,`cellecta-human-rna-xcr-umi-drivermap-air`,`illumina-human-rna-trb-ampliseq-sr`,`illumina-human-rna-trb-ampliseq-plus`,`irepertoire-human-rna-xcr-repseq-sr`,`irepertoire-human-rna-xcr-repseq-lr`,`irepertoire-mouse-rna-xcr-repseq-sr`,`irepertoire-mouse-rna-xcr-repseq-lr`,`irepertoire-human-rna-xcr-repseq-plus`,`irepertoire-mouse-rna-xcr-repseq-plus`,`irepertoire-human-dna-xcr-repseq-sr`,`irepertoire-human-dna-xcr-repseq-lr`,`milab-human-rna-ig-umi-multiplex`,`milab-human-rna-tcr-umi-race`,`milab-human-rna-tcr-umi-multiplex`,`milab-human-dna-tcr-multiplex`,`milab-human-dna-xcr-7genes-multiplex`,`milab-mouse-rna-tcr-umi-race`,`neb-human-rna-xcr-umi-nebnext`,`qiagen-human-rna-tcr-umi-qiaseq`

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