MiXCR v2.1.10

• Chain distribution is back in report file
• V/J chimera detection and elimination mechanism; new parameter minChimeraDetectionScore both alignments in R1 and R2 should be greater than this value
• Smarter second fine alignment step, new parameter alignmentBoundaryTolerance, now this mechanism is triggered even if alignment boundary not perfectly matches read boundary in the opposite mate-pair; minor bug fixes
• Fixed NPE in VDJCHit#getIdentity. Commands like mixcr exportClones ... -cBestIdentityPercent ... were affected
• New align action report line added No target with both V and J alignments; fix for inaccurate value for Alignment failed because of low total score
• Enable asserts for non-release builds, increases chance of detecting subtile error conditions, by trading-off some performance; has no effect on release builds