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milesbailey121/README.md

👋 Hi, I'm Miles Bailey!

Bioinformatician | MRes in Big Data Biology | Data Science Enthusiast

Welcome to my GitHub! I'm passionate about leveraging data science and machine learning to tackle complex biological challenges.

🚀 Skills at a Glance

  • Programming Languages: Python, R, Bash/Shell, C++
  • Libraries & Tools: NumPy, Pandas, OpenCV, PyTorch, DESeq2, Cellpose, Seurat
  • Visualization: Matplotlib, ggplot2, ComplexHeatmap, Cytoscape

📚 Notable Projects

  • Masters Thesis: Breast Tissue Cohort Analysis:
    Investigated protein expression and spatial heterogeneity in breast cancer tissues using multiplex imaging and deep learning. Developed CLI tools and scripts for segmentation and single-cell analysis in Python and R.
  • Cellpose Quantification:
    A Python Command line interface tool, used by my previous lab to perform analysis that was previously not possible
  • Sorting Visualizer in C++:
    A fun project to help build my programming skills. Built an interactive program with SFML to visualise sorting algorithms.

🧠 What I'm Learning

  • Machine learning techniques for bioinformatics and image analysis
  • Workflow management tools like Snakemake and Nextflow

🌟 Let's Collaborate!

I'm always excited to collaborate on projects at the intersection of bioinformatics and data science

Pinned Loading

  1. MRes-Dissertation MRes-Dissertation Public

    This repository contains the workflows and analysis from my MRes dissertation. The project focuses on using computational methods to explore ANAX1 expression heterogeneity, cell phenotyping, and sp…

    Jupyter Notebook 1

  2. cellpose-quantification cellpose-quantification Public

    A repository for single-cell quantification using mask formats generated by Cellpose! This CLI tool enables the analysis of single-cell data by enabling the quantification of signal intensities and…

    Python 2

  3. sorting-visualiser sorting-visualiser Public

    C++ 1