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Workflow improvement: support unaligned FASTQ inputs #36

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merged 4 commits into from
Jan 5, 2023
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  • workflow/leviosam2.sh: now supports unaligned FASTQ as inputs
  • workflow/leviosam2.py: work-in-progress. Plan to use the Python-based script as the default in the future

@milkschen milkschen merged commit 5c2a714 into main Jan 5, 2023
@milkschen milkschen deleted the workflow branch January 5, 2023 06:48
milkschen added a commit that referenced this pull request Feb 24, 2023
commit e408958
Author: Nae-Chyun Chen <s93rm6@gmail.com>
Date:   Sat Jan 7 00:37:46 2023 -0800

    Integrate strobealign in the workflow (#39)

    Support the feature request in #11

commit 797aea4
Author: Nae-Chyun Chen <s93rm6@gmail.com>
Date:   Wed Jan 4 23:40:40 2023 -0800

    Logi minor update (#38)

    Provide the script to do the color inversion

commit 9655767
Author: Nae-Chyun Chen <s93rm6@gmail.com>
Date:   Wed Jan 4 23:30:42 2023 -0800

    Dark logo (#37)

    need improvements though

commit 5c2a714
Author: Nae-Chyun Chen <s93rm6@gmail.com>
Date:   Wed Jan 4 22:48:31 2023 -0800

    Workflow improvement: support unaligned FASTQ inputs (#36)

    * `workflow/leviosam2.sh`: now supports unaligned FASTQ as inputs
    * `workflow/leviosam2.py`: work-in-progress. Plan to use the
    Python-based script as the default in the future
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