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Simple template based segmentation of the fornix (aging and healthy template)

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fornix_segmentation_registration

Simple template based segmentation of the fornix (aging and healthy template)

Both aging and healthy commands works the same. The bash script requires you to naviguate to a folder with the data, the filename used in the example are placeholder (fa.nii.gz and tracking.trk) and then you call the script with:

bash ${PATH_TO_HEALTHY_DIR}/example_healthy_cmd.sh ${YOUR_PREFIX}

This should output the Fornix as a whole, and the left/right version.

The folders both contains an FX template (Recobundles Style) linked to the original data/project, could be useful to keep around if needed.

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Simple template based segmentation of the fornix (aging and healthy template)

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